Hb_180074_010

Information

Type -
Description -
Location Contig180074: 6813-9322
Sequence    

Annotation

kegg
ID rcu:RCOM_1318760
description Single-stranded DNA-binding protein, mitochondrial precursor, putative
nr
ID XP_002529271.1
description Single-stranded DNA-binding protein, mitochondrial precursor, putative [Ricinus communis]
swissprot
ID Q84J78
description Single-stranded DNA-binding protein, mitochondrial OS=Arabidopsis thaliana GN=At4g11060 PE=2 SV=1
trembl
ID B9STF2
description Single-stranded DNA-binding protein, mitochondrial, putative OS=Ricinus communis GN=RCOM_1318760 PE=4 SV=1
Gene Ontology
ID GO:0003697
description single-stranded dna-binding mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17439: 6931-9428
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_180074_010 0.0 - - Single-stranded DNA-binding protein, mitochondrial precursor, putative [Ricinus communis]
2 Hb_033642_080 0.0779278031 - - V-type proton ATPase subunit E [Hevea brasiliensis]
3 Hb_091433_020 0.0819803705 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
4 Hb_011671_440 0.092461406 - - ATP-dependent DNA helicase pcrA, putative [Ricinus communis]
5 Hb_005391_030 0.0932167611 - - putative cytidine/deoxycytidylate deaminase family protein [Zea mays]
6 Hb_000896_040 0.0936340887 - - BnaC02g13240D [Brassica napus]
7 Hb_006478_150 0.0946170933 - - mitochondrial ribosomal protein L24, putative [Ricinus communis]
8 Hb_000413_280 0.0974342203 - - PREDICTED: probable UDP-3-O-acylglucosamine N-acyltransferase 2, mitochondrial [Jatropha curcas]
9 Hb_001369_170 0.0977144906 - - PREDICTED: 60S ribosomal protein L15-1-like [Gossypium raimondii]
10 Hb_000731_190 0.0988242688 - - PREDICTED: cardiolipin synthase (CMP-forming), mitochondrial [Jatropha curcas]
11 Hb_004543_040 0.0993035261 - - ABC transporter family protein [Hevea brasiliensis]
12 Hb_001085_270 0.1012558853 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
13 Hb_006478_160 0.1049358628 - - 20S proteasome beta subunit D1 [Hevea brasiliensis]
14 Hb_003783_030 0.1059401954 - - hypothetical protein POPTR_0018s13980g [Populus trichocarpa]
15 Hb_000417_360 0.1076193244 - - PREDICTED: hexaprenyldihydroxybenzoate methyltransferase, mitochondrial [Jatropha curcas]
16 Hb_000496_120 0.1085942086 - - PREDICTED: iron-sulfur protein NUBPL [Jatropha curcas]
17 Hb_002016_080 0.1117387329 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
18 Hb_004216_050 0.1119349164 - - PREDICTED: uncharacterized protein LOC105628422 [Jatropha curcas]
19 Hb_003020_150 0.1130344381 - - tropinone reductase, putative [Ricinus communis]
20 Hb_000788_010 0.1135820309 - - 40S ribosomal protein S16A [Hevea brasiliensis]

Gene co-expression network

sample Hb_180074_010 Hb_180074_010 Hb_033642_080 Hb_033642_080 Hb_180074_010--Hb_033642_080 Hb_091433_020 Hb_091433_020 Hb_180074_010--Hb_091433_020 Hb_011671_440 Hb_011671_440 Hb_180074_010--Hb_011671_440 Hb_005391_030 Hb_005391_030 Hb_180074_010--Hb_005391_030 Hb_000896_040 Hb_000896_040 Hb_180074_010--Hb_000896_040 Hb_006478_150 Hb_006478_150 Hb_180074_010--Hb_006478_150 Hb_033642_080--Hb_091433_020 Hb_004567_120 Hb_004567_120 Hb_033642_080--Hb_004567_120 Hb_000496_120 Hb_000496_120 Hb_033642_080--Hb_000496_120 Hb_000417_360 Hb_000417_360 Hb_033642_080--Hb_000417_360 Hb_033642_080--Hb_006478_150 Hb_091433_020--Hb_000417_360 Hb_004767_080 Hb_004767_080 Hb_091433_020--Hb_004767_080 Hb_000731_190 Hb_000731_190 Hb_091433_020--Hb_000731_190 Hb_091433_020--Hb_000496_120 Hb_011671_100 Hb_011671_100 Hb_091433_020--Hb_011671_100 Hb_000413_280 Hb_000413_280 Hb_011671_440--Hb_000413_280 Hb_011671_440--Hb_091433_020 Hb_005914_010 Hb_005914_010 Hb_011671_440--Hb_005914_010 Hb_011671_440--Hb_004767_080 Hb_000538_120 Hb_000538_120 Hb_011671_440--Hb_000538_120 Hb_000193_120 Hb_000193_120 Hb_005391_030--Hb_000193_120 Hb_000356_090 Hb_000356_090 Hb_005391_030--Hb_000356_090 Hb_000103_010 Hb_000103_010 Hb_005391_030--Hb_000103_010 Hb_001085_270 Hb_001085_270 Hb_005391_030--Hb_001085_270 Hb_007441_260 Hb_007441_260 Hb_005391_030--Hb_007441_260 Hb_003098_020 Hb_003098_020 Hb_000896_040--Hb_003098_020 Hb_000922_040 Hb_000922_040 Hb_000896_040--Hb_000922_040 Hb_000417_260 Hb_000417_260 Hb_000896_040--Hb_000417_260 Hb_000896_040--Hb_091433_020 Hb_004672_010 Hb_004672_010 Hb_000896_040--Hb_004672_010 Hb_006478_150--Hb_004567_120 Hb_004216_050 Hb_004216_050 Hb_006478_150--Hb_004216_050 Hb_006478_150--Hb_091433_020 Hb_006478_150--Hb_000417_360 Hb_000441_110 Hb_000441_110 Hb_006478_150--Hb_000441_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.68317 7.90983 12.5254 11.002 4.92818 9.79152
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.3588 47.2809 24.8719 22.8606 7.34464

CAGE analysis