Hb_180094_010

Information

Type -
Description -
Location Contig180094: 2949-3731
Sequence    

Annotation

kegg
ID sly:101265754
description uncharacterized LOC101265754
nr
ID XP_012065099.1
description PREDICTED: uncharacterized protein LOC105628311 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A0D2U001
description Gossypium raimondii chromosome 8, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_008G092500 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_180094_010 0.0 - - PREDICTED: uncharacterized protein LOC105628311 [Jatropha curcas]
2 Hb_127349_020 0.0092303016 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
3 Hb_046825_010 0.0250488626 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
4 Hb_000152_300 0.0290204791 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
5 Hb_010666_020 0.0341764797 - - hypothetical protein JCGZ_04276 [Jatropha curcas]
6 Hb_000140_040 0.0357417667 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
7 Hb_000433_040 0.0391123964 - - -
8 Hb_154064_010 0.0401487965 - - PREDICTED: uncharacterized protein LOC105780682 [Gossypium raimondii]
9 Hb_081344_010 0.0404352271 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
10 Hb_003528_100 0.0589088948 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
11 Hb_029584_020 0.0629630082 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003805_110 0.0674366631 - - PREDICTED: laccase-11-like [Jatropha curcas]
13 Hb_158597_010 0.0688578874 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial [Jatropha curcas]
14 Hb_002301_070 0.069454436 - - PREDICTED: triose phosphate/phosphate translocator TPT, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_000940_060 0.0715680553 - - hypothetical protein POPTR_0009s13250g [Populus trichocarpa]
16 Hb_004143_080 0.073286801 - - PREDICTED: protein ECERIFERUM 1 [Jatropha curcas]
17 Hb_001097_110 0.0732889092 - - gibberellin 20-oxidase, putative [Ricinus communis]
18 Hb_003787_030 0.0736967281 - - conserved hypothetical protein [Ricinus communis]
19 Hb_065774_010 0.0759886769 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic [Jatropha curcas]
20 Hb_007534_080 0.0760128145 - - d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_180094_010 Hb_180094_010 Hb_127349_020 Hb_127349_020 Hb_180094_010--Hb_127349_020 Hb_046825_010 Hb_046825_010 Hb_180094_010--Hb_046825_010 Hb_000152_300 Hb_000152_300 Hb_180094_010--Hb_000152_300 Hb_010666_020 Hb_010666_020 Hb_180094_010--Hb_010666_020 Hb_000140_040 Hb_000140_040 Hb_180094_010--Hb_000140_040 Hb_000433_040 Hb_000433_040 Hb_180094_010--Hb_000433_040 Hb_127349_020--Hb_046825_010 Hb_127349_020--Hb_000152_300 Hb_127349_020--Hb_010666_020 Hb_154064_010 Hb_154064_010 Hb_127349_020--Hb_154064_010 Hb_127349_020--Hb_000433_040 Hb_046825_010--Hb_154064_010 Hb_003528_100 Hb_003528_100 Hb_046825_010--Hb_003528_100 Hb_065774_010 Hb_065774_010 Hb_046825_010--Hb_065774_010 Hb_046825_010--Hb_000140_040 Hb_000152_300--Hb_000433_040 Hb_081344_010 Hb_081344_010 Hb_000152_300--Hb_081344_010 Hb_000152_300--Hb_010666_020 Hb_029584_020 Hb_029584_020 Hb_000152_300--Hb_029584_020 Hb_010666_020--Hb_000433_040 Hb_010666_020--Hb_081344_010 Hb_158597_010 Hb_158597_010 Hb_010666_020--Hb_158597_010 Hb_000140_040--Hb_127349_020 Hb_001097_110 Hb_001097_110 Hb_000140_040--Hb_001097_110 Hb_000140_040--Hb_000152_300 Hb_007534_080 Hb_007534_080 Hb_000140_040--Hb_007534_080 Hb_000433_040--Hb_081344_010 Hb_000433_040--Hb_029584_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0227303 0.0282425 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.109369

CAGE analysis