Hb_180293_010

Information

Type -
Description -
Location Contig180293: 2721-3035
Sequence    

Annotation

kegg
ID pop:POPTR_0008s19020g
description POPTRDRAFT_720351; hypothetical protein
nr
ID XP_002312672.1
description hypothetical protein POPTR_0008s19020g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID A9P9J5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s19020g PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_180293_010 0.0 - - hypothetical protein POPTR_0008s19020g [Populus trichocarpa]
2 Hb_000025_150 0.0817260938 transcription factor TF Family: HSF hypothetical protein POPTR_0001s28040g [Populus trichocarpa]
3 Hb_019299_010 0.0912264461 - - zinc finger protein, putative [Ricinus communis]
4 Hb_187906_010 0.0946166772 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA2-like [Populus euphratica]
5 Hb_009851_120 0.0984577202 - - PREDICTED: RING-H2 zinc finger protein RHA4a [Jatropha curcas]
6 Hb_011930_090 0.0994996607 - - PREDICTED: thioredoxin H7-like [Jatropha curcas]
7 Hb_001401_110 0.1043082662 - - hypothetical protein JCGZ_04272 [Jatropha curcas]
8 Hb_000087_160 0.1055955252 - - ABC transporter family protein [Hevea brasiliensis]
9 Hb_004807_070 0.1073359716 - - hypothetical protein POPTR_0004s17330g, partial [Populus trichocarpa]
10 Hb_147137_010 0.1079410779 - - hypothetical protein JCGZ_07229 [Jatropha curcas]
11 Hb_000438_180 0.1096679218 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
12 Hb_000754_010 0.1114234392 - - unnamed protein product [Vitis vinifera]
13 Hb_000429_080 0.113031348 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000999_060 0.1148683409 - - hypothetical protein POPTR_0018s11350g [Populus trichocarpa]
15 Hb_001232_170 0.1157456977 - - sulfate transporter, putative [Ricinus communis]
16 Hb_000959_170 0.1187076374 - - Cell division protein kinase 7, putative [Ricinus communis]
17 Hb_159791_010 0.1199350431 - - PREDICTED: cytochrome P450 84A1 [Jatropha curcas]
18 Hb_001269_430 0.1214190944 - - hypothetical protein JCGZ_04286 [Jatropha curcas]
19 Hb_012217_010 0.123090158 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]
20 Hb_006061_020 0.1233482276 transcription factor TF Family: bZIP bZIP family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_180293_010 Hb_180293_010 Hb_000025_150 Hb_000025_150 Hb_180293_010--Hb_000025_150 Hb_019299_010 Hb_019299_010 Hb_180293_010--Hb_019299_010 Hb_187906_010 Hb_187906_010 Hb_180293_010--Hb_187906_010 Hb_009851_120 Hb_009851_120 Hb_180293_010--Hb_009851_120 Hb_011930_090 Hb_011930_090 Hb_180293_010--Hb_011930_090 Hb_001401_110 Hb_001401_110 Hb_180293_010--Hb_001401_110 Hb_000438_180 Hb_000438_180 Hb_000025_150--Hb_000438_180 Hb_000025_150--Hb_001401_110 Hb_001584_250 Hb_001584_250 Hb_000025_150--Hb_001584_250 Hb_001269_430 Hb_001269_430 Hb_000025_150--Hb_001269_430 Hb_004807_070 Hb_004807_070 Hb_000025_150--Hb_004807_070 Hb_019299_010--Hb_011930_090 Hb_019299_010--Hb_009851_120 Hb_019299_010--Hb_187906_010 Hb_000087_160 Hb_000087_160 Hb_019299_010--Hb_000087_160 Hb_012217_010 Hb_012217_010 Hb_019299_010--Hb_012217_010 Hb_019299_010--Hb_001401_110 Hb_187906_010--Hb_001401_110 Hb_187906_010--Hb_000438_180 Hb_187906_010--Hb_000087_160 Hb_000959_170 Hb_000959_170 Hb_187906_010--Hb_000959_170 Hb_187906_010--Hb_009851_120 Hb_000999_060 Hb_000999_060 Hb_009851_120--Hb_000999_060 Hb_074100_010 Hb_074100_010 Hb_009851_120--Hb_074100_010 Hb_009851_120--Hb_011930_090 Hb_009851_120--Hb_001584_250 Hb_000429_080 Hb_000429_080 Hb_009851_120--Hb_000429_080 Hb_011930_090--Hb_012217_010 Hb_011930_090--Hb_000087_160 Hb_011930_090--Hb_001269_430 Hb_011930_090--Hb_000438_180 Hb_001401_110--Hb_000438_180 Hb_001401_110--Hb_004807_070 Hb_001401_110--Hb_001269_430 Hb_001712_010 Hb_001712_010 Hb_001401_110--Hb_001712_010 Hb_092272_010 Hb_092272_010 Hb_001401_110--Hb_092272_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.40708 1.10771 21.624 0.132114 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.261273 0 0 1.24357

CAGE analysis