Hb_180301_010

Information

Type -
Description -
Location Contig180301: 1475-3076
Sequence    

Annotation

kegg
ID tcc:TCM_038052
description Binding isoform 1
nr
ID XP_012089528.1
description PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061GNC7
description Binding isoform 1 OS=Theobroma cacao GN=TCM_038052 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_180301_010 0.0 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
2 Hb_004032_100 0.0673310064 - - PREDICTED: regulator of nonsense transcripts UPF3-like [Jatropha curcas]
3 Hb_004336_050 0.0678197283 - - hypothetical protein JCGZ_26651 [Jatropha curcas]
4 Hb_000172_030 0.0707899792 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
5 Hb_004374_140 0.0718599199 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
6 Hb_000751_130 0.0754775264 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
7 Hb_007735_030 0.0840150824 - - Calcium-binding EF-hand family protein isoform 1 [Theobroma cacao]
8 Hb_000024_080 0.0840191207 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
9 Hb_012653_040 0.0844361749 - - UV-induced protein uvi31, putative [Ricinus communis]
10 Hb_000787_140 0.0847499183 - - Trafficking protein particle complex subunit, putative [Ricinus communis]
11 Hb_001504_080 0.0873010315 - - golgi snare 11 protein, putative [Ricinus communis]
12 Hb_000087_020 0.0884812411 - - PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial [Jatropha curcas]
13 Hb_000364_020 0.0906927333 - - PREDICTED: SUMO-conjugating enzyme SCE1 isoform X2 [Populus euphratica]
14 Hb_000107_310 0.0908139445 - - PREDICTED: pseudouridine-metabolizing bifunctional protein C1861.05 [Jatropha curcas]
15 Hb_000024_030 0.0909397464 - - PREDICTED: tetratricopeptide repeat protein 5-like [Populus euphratica]
16 Hb_000975_110 0.0917441029 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 [Jatropha curcas]
17 Hb_000898_050 0.0940240103 - - -
18 Hb_008544_010 0.0954979835 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Jatropha curcas]
19 Hb_037887_010 0.0972732497 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
20 Hb_001584_190 0.0980491258 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]

Gene co-expression network

sample Hb_180301_010 Hb_180301_010 Hb_004032_100 Hb_004032_100 Hb_180301_010--Hb_004032_100 Hb_004336_050 Hb_004336_050 Hb_180301_010--Hb_004336_050 Hb_000172_030 Hb_000172_030 Hb_180301_010--Hb_000172_030 Hb_004374_140 Hb_004374_140 Hb_180301_010--Hb_004374_140 Hb_000751_130 Hb_000751_130 Hb_180301_010--Hb_000751_130 Hb_007735_030 Hb_007735_030 Hb_180301_010--Hb_007735_030 Hb_000024_080 Hb_000024_080 Hb_004032_100--Hb_000024_080 Hb_000087_020 Hb_000087_020 Hb_004032_100--Hb_000087_020 Hb_004032_100--Hb_000751_130 Hb_000787_140 Hb_000787_140 Hb_004032_100--Hb_000787_140 Hb_000085_320 Hb_000085_320 Hb_004032_100--Hb_000085_320 Hb_000672_120 Hb_000672_120 Hb_004336_050--Hb_000672_120 Hb_004336_050--Hb_004374_140 Hb_172706_030 Hb_172706_030 Hb_004336_050--Hb_172706_030 Hb_008544_010 Hb_008544_010 Hb_004336_050--Hb_008544_010 Hb_001307_090 Hb_001307_090 Hb_004336_050--Hb_001307_090 Hb_000172_030--Hb_000787_140 Hb_000172_030--Hb_000751_130 Hb_000172_030--Hb_000087_020 Hb_000172_030--Hb_008544_010 Hb_001437_230 Hb_001437_230 Hb_000172_030--Hb_001437_230 Hb_004374_140--Hb_008544_010 Hb_001461_010 Hb_001461_010 Hb_004374_140--Hb_001461_010 Hb_002631_020 Hb_002631_020 Hb_004374_140--Hb_002631_020 Hb_124755_010 Hb_124755_010 Hb_004374_140--Hb_124755_010 Hb_001829_060 Hb_001829_060 Hb_000751_130--Hb_001829_060 Hb_000274_020 Hb_000274_020 Hb_000751_130--Hb_000274_020 Hb_000751_130--Hb_000087_020 Hb_000046_110 Hb_000046_110 Hb_000751_130--Hb_000046_110 Hb_007735_030--Hb_004032_100 Hb_000707_030 Hb_000707_030 Hb_007735_030--Hb_000707_030 Hb_005400_030 Hb_005400_030 Hb_007735_030--Hb_005400_030 Hb_002296_040 Hb_002296_040 Hb_007735_030--Hb_002296_040 Hb_000024_030 Hb_000024_030 Hb_007735_030--Hb_000024_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.80243 4.05924 2.56954 13.9571 8.94851 22.8614
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.0918 24.5815 21.1531 7.54648 5.28665

CAGE analysis