Hb_180333_010

Information

Type -
Description -
Location Contig180333: 7475-9306
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_180333_010 0.0 - - -
2 Hb_004607_150 0.096158831 - - PREDICTED: serine/threonine-protein kinase UCNL [Jatropha curcas]
3 Hb_006189_010 0.0989281145 - - -
4 Hb_003185_020 0.1140863077 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 50 [Jatropha curcas]
5 Hb_003106_070 0.1275582424 - - PREDICTED: uncharacterized protein LOC105167687 [Sesamum indicum]
6 Hb_004012_010 0.129817101 - - PREDICTED: 40S ribosomal protein S15a-1-like [Gossypium raimondii]
7 Hb_000085_270 0.1306868103 - - PREDICTED: pirin-like protein [Malus domestica]
8 Hb_012052_060 0.1346783635 - - hypothetical protein POPTR_0018s10190g [Populus trichocarpa]
9 Hb_084934_010 0.1355395852 - - hypothetical protein JCGZ_22225 [Jatropha curcas]
10 Hb_004920_040 0.1364559946 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
11 Hb_010449_020 0.140810088 - - PREDICTED: rRNA-processing protein UTP23 homolog [Jatropha curcas]
12 Hb_008959_030 0.1444842614 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
13 Hb_006775_080 0.1463413093 - - PREDICTED: uncharacterized protein LOC105649730 [Jatropha curcas]
14 Hb_004055_010 0.1465728992 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
15 Hb_000768_050 0.1474761782 - - hypothetical protein RCOM_0845740 [Ricinus communis]
16 Hb_007849_040 0.1478118747 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Vitis vinifera]
17 Hb_001186_060 0.1500319152 - - -
18 Hb_010883_210 0.1519797874 - - PREDICTED: selenoprotein K [Jatropha curcas]
19 Hb_002762_060 0.152370469 - - PREDICTED: diphthine methyltransferase homolog [Jatropha curcas]
20 Hb_002495_070 0.1532948114 - - PREDICTED: uncharacterized protein LOC105634731 [Jatropha curcas]

Gene co-expression network

sample Hb_180333_010 Hb_180333_010 Hb_004607_150 Hb_004607_150 Hb_180333_010--Hb_004607_150 Hb_006189_010 Hb_006189_010 Hb_180333_010--Hb_006189_010 Hb_003185_020 Hb_003185_020 Hb_180333_010--Hb_003185_020 Hb_003106_070 Hb_003106_070 Hb_180333_010--Hb_003106_070 Hb_004012_010 Hb_004012_010 Hb_180333_010--Hb_004012_010 Hb_000085_270 Hb_000085_270 Hb_180333_010--Hb_000085_270 Hb_004607_150--Hb_006189_010 Hb_002798_060 Hb_002798_060 Hb_004607_150--Hb_002798_060 Hb_000116_470 Hb_000116_470 Hb_004607_150--Hb_000116_470 Hb_004607_150--Hb_004012_010 Hb_004920_040 Hb_004920_040 Hb_004607_150--Hb_004920_040 Hb_084934_010 Hb_084934_010 Hb_006189_010--Hb_084934_010 Hb_011472_040 Hb_011472_040 Hb_006189_010--Hb_011472_040 Hb_001186_060 Hb_001186_060 Hb_006189_010--Hb_001186_060 Hb_157854_010 Hb_157854_010 Hb_006189_010--Hb_157854_010 Hb_010449_020 Hb_010449_020 Hb_003185_020--Hb_010449_020 Hb_003185_020--Hb_004012_010 Hb_003185_020--Hb_157854_010 Hb_002762_060 Hb_002762_060 Hb_003185_020--Hb_002762_060 Hb_000392_270 Hb_000392_270 Hb_003185_020--Hb_000392_270 Hb_004722_060 Hb_004722_060 Hb_003185_020--Hb_004722_060 Hb_000768_050 Hb_000768_050 Hb_003106_070--Hb_000768_050 Hb_010883_210 Hb_010883_210 Hb_003106_070--Hb_010883_210 Hb_003106_070--Hb_004920_040 Hb_002495_070 Hb_002495_070 Hb_003106_070--Hb_002495_070 Hb_003106_070--Hb_010449_020 Hb_003106_070--Hb_003185_020 Hb_024835_030 Hb_024835_030 Hb_004012_010--Hb_024835_030 Hb_026198_050 Hb_026198_050 Hb_004012_010--Hb_026198_050 Hb_006775_080 Hb_006775_080 Hb_004012_010--Hb_006775_080 Hb_004012_010--Hb_004920_040 Hb_004012_010--Hb_002762_060 Hb_001248_050 Hb_001248_050 Hb_000085_270--Hb_001248_050 Hb_000483_350 Hb_000483_350 Hb_000085_270--Hb_000483_350 Hb_004109_200 Hb_004109_200 Hb_000085_270--Hb_004109_200 Hb_004221_010 Hb_004221_010 Hb_000085_270--Hb_004221_010 Hb_004055_010 Hb_004055_010 Hb_000085_270--Hb_004055_010 Hb_000085_270--Hb_004920_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.6924 6.00355 0.766953 0.382511 5.06125 5.71363
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.4644 7.98317 3.81893 2.22861 0.241953

CAGE analysis