Hb_180450_010

Information

Type -
Description -
Location Contig180450: 3-1384
Sequence    

Annotation

kegg
ID pop:POPTR_0014s01360g
description POPTRDRAFT_572009; FF domain-containing family protein
nr
ID XP_002320019.2
description FF domain-containing family protein [Populus trichocarpa]
swissprot
ID B6EUA9
description Pre-mRNA-processing protein 40A OS=Arabidopsis thaliana GN=PRP40A PE=1 SV=1
trembl
ID B9IBN8
description FF domain-containing family protein OS=Populus trichocarpa GN=POPTR_0014s01360g PE=4 SV=2
Gene Ontology
ID GO:0044424
description pre-mrna-processing protein 40a-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17471: 57-257 , PASA_asmbl_17472: 34-573
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_180450_010 0.0 - - FF domain-containing family protein [Populus trichocarpa]
2 Hb_020805_180 0.1057711242 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
3 Hb_005333_050 0.1163924201 - - PREDICTED: glucose-6-phosphate isomerase 1, chloroplastic [Jatropha curcas]
4 Hb_000317_350 0.1190036726 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
5 Hb_000455_130 0.1225807315 - - PREDICTED: aspartic proteinase A1-like isoform X1 [Jatropha curcas]
6 Hb_012022_080 0.1274999023 - - ubiquitin-protein ligase, putative [Ricinus communis]
7 Hb_001269_650 0.1278186456 - - transporter, putative [Ricinus communis]
8 Hb_021576_010 0.1305521604 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
9 Hb_000022_150 0.1318183195 - - -
10 Hb_001497_060 0.1341425363 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
11 Hb_001642_070 0.1362390904 - - PREDICTED: uncharacterized protein LOC105646431 [Jatropha curcas]
12 Hb_011537_060 0.1371112003 - - UPF0061 protein azo1574 [Morus notabilis]
13 Hb_000321_090 0.1373393051 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
14 Hb_000190_090 0.1377178204 - - PREDICTED: uncharacterized protein LOC105649930 [Jatropha curcas]
15 Hb_000152_700 0.137754208 - - PREDICTED: E3 ubiquitin protein ligase RIN2 [Jatropha curcas]
16 Hb_000950_060 0.138557523 - - PREDICTED: CCAAT/enhancer-binding protein zeta [Jatropha curcas]
17 Hb_004586_350 0.1391943435 - - Phosphoribosylaminoimidazole-succinocarboxamide synthase [Morus notabilis]
18 Hb_075315_010 0.1397014954 - - ornithine aminotransferase [Camellia sinensis]
19 Hb_009732_020 0.1398298469 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
20 Hb_002025_330 0.1401324728 - - peptide transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_180450_010 Hb_180450_010 Hb_020805_180 Hb_020805_180 Hb_180450_010--Hb_020805_180 Hb_005333_050 Hb_005333_050 Hb_180450_010--Hb_005333_050 Hb_000317_350 Hb_000317_350 Hb_180450_010--Hb_000317_350 Hb_000455_130 Hb_000455_130 Hb_180450_010--Hb_000455_130 Hb_012022_080 Hb_012022_080 Hb_180450_010--Hb_012022_080 Hb_001269_650 Hb_001269_650 Hb_180450_010--Hb_001269_650 Hb_080147_050 Hb_080147_050 Hb_020805_180--Hb_080147_050 Hb_000321_090 Hb_000321_090 Hb_020805_180--Hb_000321_090 Hb_002851_010 Hb_002851_010 Hb_020805_180--Hb_002851_010 Hb_000649_060 Hb_000649_060 Hb_020805_180--Hb_000649_060 Hb_000157_070 Hb_000157_070 Hb_020805_180--Hb_000157_070 Hb_002027_190 Hb_002027_190 Hb_020805_180--Hb_002027_190 Hb_002046_010 Hb_002046_010 Hb_005333_050--Hb_002046_010 Hb_019840_030 Hb_019840_030 Hb_005333_050--Hb_019840_030 Hb_000022_150 Hb_000022_150 Hb_005333_050--Hb_000022_150 Hb_039946_050 Hb_039946_050 Hb_005333_050--Hb_039946_050 Hb_000009_120 Hb_000009_120 Hb_005333_050--Hb_000009_120 Hb_002889_020 Hb_002889_020 Hb_005333_050--Hb_002889_020 Hb_028960_030 Hb_028960_030 Hb_000317_350--Hb_028960_030 Hb_000049_250 Hb_000049_250 Hb_000317_350--Hb_000049_250 Hb_000317_350--Hb_005333_050 Hb_000317_350--Hb_000321_090 Hb_000009_030 Hb_000009_030 Hb_000317_350--Hb_000009_030 Hb_000317_350--Hb_020805_180 Hb_000455_130--Hb_019840_030 Hb_000455_130--Hb_000321_090 Hb_006478_030 Hb_006478_030 Hb_000455_130--Hb_006478_030 Hb_001221_180 Hb_001221_180 Hb_000455_130--Hb_001221_180 Hb_007747_170 Hb_007747_170 Hb_000455_130--Hb_007747_170 Hb_000455_130--Hb_080147_050 Hb_000190_090 Hb_000190_090 Hb_012022_080--Hb_000190_090 Hb_000159_120 Hb_000159_120 Hb_012022_080--Hb_000159_120 Hb_025336_020 Hb_025336_020 Hb_012022_080--Hb_025336_020 Hb_021576_010 Hb_021576_010 Hb_012022_080--Hb_021576_010 Hb_000327_250 Hb_000327_250 Hb_012022_080--Hb_000327_250 Hb_011224_160 Hb_011224_160 Hb_012022_080--Hb_011224_160 Hb_001269_650--Hb_011224_160 Hb_001269_650--Hb_021576_010 Hb_001269_650--Hb_000190_090 Hb_001269_650--Hb_028960_030 Hb_000979_220 Hb_000979_220 Hb_001269_650--Hb_000979_220 Hb_000510_340 Hb_000510_340 Hb_001269_650--Hb_000510_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.60196 3.30042 2.80746 4.01736 2.81249 1.77058
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.43186 2.21613 1.814 10.6469 5.67748

CAGE analysis