Hb_180518_010

Information

Type -
Description -
Location Contig180518: 14-595
Sequence    

Annotation

kegg
ID pop:POPTR_0008s186601
description hypothetical protein
nr
ID XP_012067129.1
description PREDICTED: receptor-like protein 2 [Jatropha curcas]
swissprot
ID Q9ASS4
description Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 OS=Arabidopsis thaliana GN=At5g48380 PE=1 SV=1
trembl
ID U5G8J1
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0008s186601g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_180518_010 0.0 - - PREDICTED: receptor-like protein 2 [Jatropha curcas]
2 Hb_027577_010 0.0336564482 - - PREDICTED: uncharacterized protein LOC104779928 [Camelina sativa]
3 Hb_000581_010 0.0533137627 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Jatropha curcas]
4 Hb_000487_350 0.0539766813 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002031_020 0.0568103521 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
6 Hb_005291_020 0.0703763691 - - conserved hypothetical protein [Ricinus communis]
7 Hb_103468_010 0.0708380902 - - protein binding protein, putative [Ricinus communis]
8 Hb_000327_350 0.0785743489 - - PREDICTED: 3-ketoacyl-CoA synthase 21-like [Jatropha curcas]
9 Hb_000188_040 0.079951097 - - PREDICTED: uncharacterized protein LOC105629522 [Jatropha curcas]
10 Hb_000729_040 0.0863916999 - - xyloglucan endotransglucosylase/hydrolase protein 10 precursor [Populus trichocarpa]
11 Hb_001856_250 0.0869419411 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Jatropha curcas]
12 Hb_000462_120 0.0871245699 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105642310 [Jatropha curcas]
13 Hb_000483_340 0.0888068409 - - conserved hypothetical protein [Ricinus communis]
14 Hb_133926_010 0.0889767411 - - hypothetical protein JCGZ_08917 [Jatropha curcas]
15 Hb_003060_020 0.0891029561 - - serine carboxypeptidase, putative [Ricinus communis]
16 Hb_003580_020 0.0909843591 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002785_020 0.0954440591 - - PREDICTED: laccase-4-like [Jatropha curcas]
18 Hb_002734_020 0.0962832957 - - PREDICTED: uncharacterized protein LOC105631540 [Jatropha curcas]
19 Hb_003528_090 0.0981364825 - - Uncharacterized protein TCM_037169 [Theobroma cacao]
20 Hb_000521_030 0.099011906 - - PREDICTED: uncharacterized protein LOC105650350 [Jatropha curcas]

Gene co-expression network

sample Hb_180518_010 Hb_180518_010 Hb_027577_010 Hb_027577_010 Hb_180518_010--Hb_027577_010 Hb_000581_010 Hb_000581_010 Hb_180518_010--Hb_000581_010 Hb_000487_350 Hb_000487_350 Hb_180518_010--Hb_000487_350 Hb_002031_020 Hb_002031_020 Hb_180518_010--Hb_002031_020 Hb_005291_020 Hb_005291_020 Hb_180518_010--Hb_005291_020 Hb_103468_010 Hb_103468_010 Hb_180518_010--Hb_103468_010 Hb_027577_010--Hb_000487_350 Hb_027577_010--Hb_000581_010 Hb_001856_250 Hb_001856_250 Hb_027577_010--Hb_001856_250 Hb_000729_040 Hb_000729_040 Hb_027577_010--Hb_000729_040 Hb_000483_340 Hb_000483_340 Hb_027577_010--Hb_000483_340 Hb_000581_010--Hb_000487_350 Hb_000581_010--Hb_002031_020 Hb_000581_010--Hb_000729_040 Hb_000581_010--Hb_001856_250 Hb_000487_350--Hb_002031_020 Hb_000487_350--Hb_001856_250 Hb_000487_350--Hb_000729_040 Hb_002031_020--Hb_027577_010 Hb_188281_020 Hb_188281_020 Hb_002031_020--Hb_188281_020 Hb_000188_040 Hb_000188_040 Hb_002031_020--Hb_000188_040 Hb_003580_020 Hb_003580_020 Hb_005291_020--Hb_003580_020 Hb_000462_120 Hb_000462_120 Hb_005291_020--Hb_000462_120 Hb_002014_130 Hb_002014_130 Hb_005291_020--Hb_002014_130 Hb_005291_020--Hb_027577_010 Hb_000497_030 Hb_000497_030 Hb_005291_020--Hb_000497_030 Hb_003060_020 Hb_003060_020 Hb_103468_010--Hb_003060_020 Hb_014834_100 Hb_014834_100 Hb_103468_010--Hb_014834_100 Hb_006249_010 Hb_006249_010 Hb_103468_010--Hb_006249_010 Hb_103468_010--Hb_027577_010 Hb_000868_020 Hb_000868_020 Hb_103468_010--Hb_000868_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0466111 0.177789 5.00399 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.10238 0.959612

CAGE analysis