Hb_180695_010

Information

Type -
Description -
Location Contig180695: 1215-1493
Sequence    

Annotation

kegg
ID cic:CICLE_v10013449mg
description hypothetical protein
nr
ID XP_006428274.1
description hypothetical protein CICLE_v10013449mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4UPT6
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013449mg PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_180695_010 0.0 - - hypothetical protein CICLE_v10013449mg [Citrus clementina]
2 Hb_015934_100 0.0910190306 - - phospholipid/glycerol acyltransferase family protein [Populus trichocarpa]
3 Hb_087314_010 0.100727417 - - -
4 Hb_048987_020 0.1204713365 - - hypothetical protein JCGZ_27055 [Jatropha curcas]
5 Hb_005916_040 0.1205397328 - - PREDICTED: auxin transporter-like protein 5 [Populus euphratica]
6 Hb_107495_060 0.1240946693 - - Cell division protein kinase, putative [Ricinus communis]
7 Hb_033772_040 0.1419957594 - - conserved hypothetical protein [Ricinus communis]
8 Hb_034310_020 0.1469483411 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 [Jatropha curcas]
9 Hb_002641_090 0.1495217847 - - PREDICTED: uncharacterized protein LOC105643559 [Jatropha curcas]
10 Hb_096878_010 0.1510677146 - - hypothetical protein POPTR_0112s002001g, partial [Populus trichocarpa]
11 Hb_005214_050 0.1557836026 - - PREDICTED: leucine-rich repeat receptor protein kinase MSP1-like [Jatropha curcas]
12 Hb_014549_010 0.1565895533 - - PREDICTED: uncharacterized protein LOC101512634 [Cicer arietinum]
13 Hb_006573_270 0.1593768161 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000373_260 0.1594551358 - - hypothetical protein POPTR_0002s06820g [Populus trichocarpa]
15 Hb_000635_190 0.1602156465 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103322127 [Prunus mume]
16 Hb_000172_310 0.1630507687 - - PREDICTED: fasciclin-like arabinogalactan protein 21 [Jatropha curcas]
17 Hb_036602_010 0.1635236358 - - PREDICTED: wall-associated receptor kinase 2-like [Jatropha curcas]
18 Hb_004899_380 0.163881681 - - conserved hypothetical protein [Ricinus communis]
19 Hb_133508_020 0.1653849282 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
20 Hb_006721_060 0.1666931565 - - RnaseH (mitochondrion) [Malus domestica]

Gene co-expression network

sample Hb_180695_010 Hb_180695_010 Hb_015934_100 Hb_015934_100 Hb_180695_010--Hb_015934_100 Hb_087314_010 Hb_087314_010 Hb_180695_010--Hb_087314_010 Hb_048987_020 Hb_048987_020 Hb_180695_010--Hb_048987_020 Hb_005916_040 Hb_005916_040 Hb_180695_010--Hb_005916_040 Hb_107495_060 Hb_107495_060 Hb_180695_010--Hb_107495_060 Hb_033772_040 Hb_033772_040 Hb_180695_010--Hb_033772_040 Hb_185666_010 Hb_185666_010 Hb_015934_100--Hb_185666_010 Hb_133508_020 Hb_133508_020 Hb_015934_100--Hb_133508_020 Hb_096878_010 Hb_096878_010 Hb_015934_100--Hb_096878_010 Hb_185830_090 Hb_185830_090 Hb_015934_100--Hb_185830_090 Hb_010672_010 Hb_010672_010 Hb_015934_100--Hb_010672_010 Hb_087314_010--Hb_048987_020 Hb_087314_010--Hb_107495_060 Hb_072670_010 Hb_072670_010 Hb_087314_010--Hb_072670_010 Hb_006721_060 Hb_006721_060 Hb_087314_010--Hb_006721_060 Hb_029576_070 Hb_029576_070 Hb_087314_010--Hb_029576_070 Hb_004899_380 Hb_004899_380 Hb_048987_020--Hb_004899_380 Hb_004474_020 Hb_004474_020 Hb_048987_020--Hb_004474_020 Hb_034310_020 Hb_034310_020 Hb_048987_020--Hb_034310_020 Hb_003878_130 Hb_003878_130 Hb_048987_020--Hb_003878_130 Hb_000086_510 Hb_000086_510 Hb_005916_040--Hb_000086_510 Hb_001025_100 Hb_001025_100 Hb_005916_040--Hb_001025_100 Hb_000157_020 Hb_000157_020 Hb_005916_040--Hb_000157_020 Hb_000243_340 Hb_000243_340 Hb_005916_040--Hb_000243_340 Hb_002601_040 Hb_002601_040 Hb_005916_040--Hb_002601_040 Hb_107495_060--Hb_072670_010 Hb_000373_260 Hb_000373_260 Hb_107495_060--Hb_000373_260 Hb_005736_010 Hb_005736_010 Hb_107495_060--Hb_005736_010 Hb_107495_060--Hb_033772_040 Hb_033772_040--Hb_034310_020 Hb_004319_100 Hb_004319_100 Hb_033772_040--Hb_004319_100 Hb_033772_040--Hb_004474_020 Hb_001529_010 Hb_001529_010 Hb_033772_040--Hb_001529_010 Hb_010926_020 Hb_010926_020 Hb_033772_040--Hb_010926_020 Hb_033772_040--Hb_004899_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.45936 1.38677 3.31235 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.500402 0

CAGE analysis