Hb_180864_010

Information

Type -
Description -
Location Contig180864: 42-833
Sequence    

Annotation

kegg
ID bdi:100839326
description E3 ubiquitin-protein ligase RBBP6-like
nr
ID KJB65487.1
description hypothetical protein B456_010G097000 [Gossypium raimondii]
swissprot
ID P43254
description E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1 PE=1 SV=2
trembl
ID A0A0D2R558
description Gossypium raimondii chromosome 10, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_010G097000 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_180864_010 0.0 - - hypothetical protein B456_010G097000 [Gossypium raimondii]
2 Hb_001242_170 0.0236320083 - - conserved hypothetical protein [Ricinus communis]
3 Hb_085600_010 0.0342676579 - - PREDICTED: peroxidase 24-like [Jatropha curcas]
4 Hb_000984_280 0.0429251557 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2 [Jatropha curcas]
5 Hb_000732_200 0.06498776 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004598_020 0.0663343634 transcription factor TF Family: ERF Transcriptional factor TINY, putative [Ricinus communis]
7 Hb_003082_090 0.0665559633 - - hypothetical protein POPTR_0013s099451g, partial [Populus trichocarpa]
8 Hb_000531_010 0.0668219385 transcription factor TF Family: G2-like hypothetical protein POPTR_0018s14830g [Populus trichocarpa]
9 Hb_002217_400 0.0671921657 - - polynucleotidyl transferase, ribonuclease H-like protein [Arabidopsis thaliana]
10 Hb_002025_280 0.0710088136 - - PREDICTED: uncharacterized protein LOC105634201 [Jatropha curcas]
11 Hb_000617_160 0.0754032127 - - -
12 Hb_000028_450 0.0772223595 - - PREDICTED: monoglyceride lipase-like [Jatropha curcas]
13 Hb_002766_070 0.0786198995 transcription factor TF Family: MYB hypothetical protein JCGZ_17894 [Jatropha curcas]
14 Hb_000504_060 0.0813390691 - - Cell division cycle protein cdt2, putative [Ricinus communis]
15 Hb_138585_070 0.0814992781 - - conserved hypothetical protein [Ricinus communis]
16 Hb_059502_010 0.0876943846 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
17 Hb_005357_040 0.0921755086 - - gibberellin 20-oxidase, putative [Ricinus communis]
18 Hb_033312_100 0.1067005276 - - -
19 Hb_005389_030 0.1089509983 - - hypothetical protein VITISV_023348 [Vitis vinifera]
20 Hb_001052_020 0.1167050709 - - hypothetical protein JCGZ_26487 [Jatropha curcas]

Gene co-expression network

sample Hb_180864_010 Hb_180864_010 Hb_001242_170 Hb_001242_170 Hb_180864_010--Hb_001242_170 Hb_085600_010 Hb_085600_010 Hb_180864_010--Hb_085600_010 Hb_000984_280 Hb_000984_280 Hb_180864_010--Hb_000984_280 Hb_000732_200 Hb_000732_200 Hb_180864_010--Hb_000732_200 Hb_004598_020 Hb_004598_020 Hb_180864_010--Hb_004598_020 Hb_003082_090 Hb_003082_090 Hb_180864_010--Hb_003082_090 Hb_001242_170--Hb_085600_010 Hb_001242_170--Hb_000984_280 Hb_001242_170--Hb_000732_200 Hb_000504_060 Hb_000504_060 Hb_001242_170--Hb_000504_060 Hb_000617_160 Hb_000617_160 Hb_001242_170--Hb_000617_160 Hb_085600_010--Hb_000984_280 Hb_085600_010--Hb_000504_060 Hb_002025_280 Hb_002025_280 Hb_085600_010--Hb_002025_280 Hb_002766_070 Hb_002766_070 Hb_085600_010--Hb_002766_070 Hb_000984_280--Hb_000732_200 Hb_000984_280--Hb_000504_060 Hb_000984_280--Hb_000617_160 Hb_000732_200--Hb_000617_160 Hb_138585_070 Hb_138585_070 Hb_000732_200--Hb_138585_070 Hb_002217_400 Hb_002217_400 Hb_000732_200--Hb_002217_400 Hb_005357_040 Hb_005357_040 Hb_000732_200--Hb_005357_040 Hb_000028_450 Hb_000028_450 Hb_000732_200--Hb_000028_450 Hb_004598_020--Hb_003082_090 Hb_070266_010 Hb_070266_010 Hb_004598_020--Hb_070266_010 Hb_004598_020--Hb_002217_400 Hb_002267_110 Hb_002267_110 Hb_004598_020--Hb_002267_110 Hb_004598_020--Hb_000028_450 Hb_003082_090--Hb_002217_400 Hb_003082_090--Hb_000028_450 Hb_003082_090--Hb_005357_040 Hb_005389_030 Hb_005389_030 Hb_003082_090--Hb_005389_030 Hb_003082_090--Hb_000617_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.163702 0.265084 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0440043 0

CAGE analysis