Hb_181013_010

Information

Type -
Description -
Location Contig181013: 2024-4200
Sequence    

Annotation

kegg
ID cmo:103501196
description uncharacterized LOC103501196
nr
ID XP_012065931.1
description PREDICTED: uncharacterized protein LOC105629028 [Jatropha curcas]
swissprot
ID P04146
description Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3
trembl
ID M1CU18
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400029043 PE=4 SV=1
Gene Ontology
ID GO:0097159
description cysteine-rich rlk (receptor-like protein kinase) 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_181013_010 0.0 - - PREDICTED: uncharacterized protein LOC105629028 [Jatropha curcas]
2 Hb_000142_090 0.0051641104 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
3 Hb_005432_020 0.0063983193 - - -
4 Hb_101034_010 0.0124254549 - - -
5 Hb_134377_070 0.0141623821 - - -
6 Hb_006120_160 0.0194884666 - - -
7 Hb_159124_010 0.0240054433 - - PREDICTED: uncharacterized protein LOC103332224 [Prunus mume]
8 Hb_056506_080 0.0540456289 - - PREDICTED: uncharacterized protein LOC104888944 [Beta vulgaris subsp. vulgaris]
9 Hb_047923_030 0.0723056695 - - hypothetical protein JCGZ_09181 [Jatropha curcas]
10 Hb_002576_010 0.0760190872 - - -
11 Hb_179183_010 0.0785176324 - - RALF-LIKE 32 family protein [Populus trichocarpa]
12 Hb_000975_060 0.0789669966 - - -
13 Hb_099878_040 0.0928589901 - - PREDICTED: uncharacterized protein LOC102703670 [Oryza brachyantha]
14 Hb_008755_020 0.0951059528 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_000248_020 0.0964846654 - - PREDICTED: uncharacterized protein LOC104243878 [Nicotiana sylvestris]
16 Hb_094694_010 0.1001423004 - - -
17 Hb_039547_010 0.1144600297 - - PREDICTED: equilibrative nucleotide transporter 3-like [Jatropha curcas]
18 Hb_000916_010 0.1150266166 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
19 Hb_001174_050 0.1280703332 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_000209_010 0.1401903101 - - -

Gene co-expression network

sample Hb_181013_010 Hb_181013_010 Hb_000142_090 Hb_000142_090 Hb_181013_010--Hb_000142_090 Hb_005432_020 Hb_005432_020 Hb_181013_010--Hb_005432_020 Hb_101034_010 Hb_101034_010 Hb_181013_010--Hb_101034_010 Hb_134377_070 Hb_134377_070 Hb_181013_010--Hb_134377_070 Hb_006120_160 Hb_006120_160 Hb_181013_010--Hb_006120_160 Hb_159124_010 Hb_159124_010 Hb_181013_010--Hb_159124_010 Hb_000142_090--Hb_134377_070 Hb_000142_090--Hb_005432_020 Hb_000142_090--Hb_101034_010 Hb_000142_090--Hb_006120_160 Hb_000142_090--Hb_159124_010 Hb_005432_020--Hb_101034_010 Hb_005432_020--Hb_006120_160 Hb_005432_020--Hb_134377_070 Hb_005432_020--Hb_159124_010 Hb_101034_010--Hb_006120_160 Hb_101034_010--Hb_159124_010 Hb_101034_010--Hb_134377_070 Hb_134377_070--Hb_159124_010 Hb_134377_070--Hb_006120_160 Hb_006120_160--Hb_159124_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0287038 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0251568 0.122684

CAGE analysis