Hb_181092_010

Information

Type -
Description -
Location Contig181092: 967-1828
Sequence    

Annotation

kegg
ID vvi:100263483
description (-)-alpha-terpineol synthase-like
nr
ID CBI40170.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q93X23
description Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1
trembl
ID D7UBQ6
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0067g03770 PE=4 SV=1
Gene Ontology
ID GO:0009536
description terpene synthase 10-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_181092_010 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_000856_350 0.0664811634 transcription factor TF Family: WRKY WRKY transcription factor 36 [Jatropha curcas]
3 Hb_156949_010 0.0700271405 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
4 Hb_002677_010 0.0764769255 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2 [Populus euphratica]
5 Hb_002986_110 0.0790541447 - - PREDICTED: patatin-like protein 1 [Jatropha curcas]
6 Hb_000185_060 0.0827273065 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
7 Hb_013654_010 0.0842420287 - - unnamed protein product [Vitis vinifera]
8 Hb_001269_020 0.0848632911 - - PREDICTED: beta-Amyrin Synthase 2-like [Vitis vinifera]
9 Hb_032582_010 0.0879778823 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
10 Hb_009083_080 0.0899467132 - - conserved hypothetical protein [Ricinus communis]
11 Hb_125876_010 0.0921961304 - - unnamed protein product [Vitis vinifera]
12 Hb_008616_020 0.0931041132 - - unnamed protein product [Vitis vinifera]
13 Hb_008053_070 0.0974546363 - - PREDICTED: U-box domain-containing protein 33-like isoform X4 [Jatropha curcas]
14 Hb_003010_060 0.0978553685 - - Patatin T5 precursor, putative [Ricinus communis]
15 Hb_001427_130 0.0988612775 - - PREDICTED: uncharacterized protein LOC101510272 [Cicer arietinum]
16 Hb_010839_020 0.0992774746 - - -
17 Hb_032215_070 0.0993484361 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_002138_030 0.0997323478 - - -
19 Hb_005846_010 0.1004138606 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like [Populus euphratica]
20 Hb_151236_010 0.1005330682 - - hypothetical protein POPTR_0010s11560g [Populus trichocarpa]

Gene co-expression network

sample Hb_181092_010 Hb_181092_010 Hb_000856_350 Hb_000856_350 Hb_181092_010--Hb_000856_350 Hb_156949_010 Hb_156949_010 Hb_181092_010--Hb_156949_010 Hb_002677_010 Hb_002677_010 Hb_181092_010--Hb_002677_010 Hb_002986_110 Hb_002986_110 Hb_181092_010--Hb_002986_110 Hb_000185_060 Hb_000185_060 Hb_181092_010--Hb_000185_060 Hb_013654_010 Hb_013654_010 Hb_181092_010--Hb_013654_010 Hb_000856_350--Hb_156949_010 Hb_007729_010 Hb_007729_010 Hb_000856_350--Hb_007729_010 Hb_000856_350--Hb_002986_110 Hb_000856_350--Hb_013654_010 Hb_032582_010 Hb_032582_010 Hb_000856_350--Hb_032582_010 Hb_002603_020 Hb_002603_020 Hb_156949_010--Hb_002603_020 Hb_125876_010 Hb_125876_010 Hb_156949_010--Hb_125876_010 Hb_005846_010 Hb_005846_010 Hb_156949_010--Hb_005846_010 Hb_004918_040 Hb_004918_040 Hb_156949_010--Hb_004918_040 Hb_003735_010 Hb_003735_010 Hb_156949_010--Hb_003735_010 Hb_002677_010--Hb_032582_010 Hb_008616_020 Hb_008616_020 Hb_002677_010--Hb_008616_020 Hb_002677_010--Hb_000185_060 Hb_002677_010--Hb_002986_110 Hb_008053_070 Hb_008053_070 Hb_002677_010--Hb_008053_070 Hb_002986_110--Hb_013654_010 Hb_002005_010 Hb_002005_010 Hb_002986_110--Hb_002005_010 Hb_008214_010 Hb_008214_010 Hb_002986_110--Hb_008214_010 Hb_008052_020 Hb_008052_020 Hb_002986_110--Hb_008052_020 Hb_032443_030 Hb_032443_030 Hb_002986_110--Hb_032443_030 Hb_032215_070 Hb_032215_070 Hb_002986_110--Hb_032215_070 Hb_000185_060--Hb_008616_020 Hb_000185_060--Hb_032582_010 Hb_000185_060--Hb_008053_070 Hb_001376_040 Hb_001376_040 Hb_000185_060--Hb_001376_040 Hb_013654_010--Hb_008214_010 Hb_013654_010--Hb_008052_020 Hb_013654_010--Hb_002005_010 Hb_013654_010--Hb_032215_070 Hb_001427_130 Hb_001427_130 Hb_013654_010--Hb_001427_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.607186 0 0.0266772 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.776472 0

CAGE analysis