Hb_181110_010

Information

Type -
Description -
Location Contig181110: 132-975
Sequence    

Annotation

kegg
ID rcu:RCOM_0613430
description auxin:hydrogen symporter, putative
nr
ID XP_002528527.1
description auxin:hydrogen symporter, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SRA8
description Auxin:hydrogen symporter, putative OS=Ricinus communis GN=RCOM_0613430 PE=4 SV=1
Gene Ontology
ID GO:0016021
description uncharacterized transporter ybr287w-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_181110_010 0.0 - - auxin:hydrogen symporter, putative [Ricinus communis]
2 Hb_003845_020 0.1755440314 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_009732_020 0.1760940442 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
4 Hb_001946_150 0.1768132466 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002631_040 0.1865143254 - - hypothetical protein EUGRSUZ_J03178 [Eucalyptus grandis]
6 Hb_006717_070 0.1865765958 transcription factor TF Family: MYB-related PREDICTED: transcription factor CPC-like [Jatropha curcas]
7 Hb_000120_390 0.1900194643 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
8 Hb_002304_140 0.1936570273 - - ring finger protein, putative [Ricinus communis]
9 Hb_001080_140 0.1937905941 transcription factor TF Family: RWP-RK conserved hypothetical protein [Ricinus communis]
10 Hb_000347_110 0.1960860216 - - BnaA05g25330D [Brassica napus]
11 Hb_001369_230 0.1972522943 - - PREDICTED: F-box protein At5g07670 [Jatropha curcas]
12 Hb_001828_020 0.1975570757 - - hypothetical protein CISIN_1g010132mg [Citrus sinensis]
13 Hb_000417_320 0.198725278 - - hypothetical protein CICLE_v10000333mg [Citrus clementina]
14 Hb_002598_010 0.1991291955 - - sugar transporter, putative [Ricinus communis]
15 Hb_000081_120 0.200939667 - - H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]
16 Hb_000227_040 0.2016482813 - - Stem-specific protein TSJT1, putative [Ricinus communis]
17 Hb_004129_050 0.2035798732 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 5 [Jatropha curcas]
18 Hb_000009_120 0.2043204689 - - PREDICTED: probable Xaa-Pro aminopeptidase P isoform X1 [Jatropha curcas]
19 Hb_000866_090 0.2044032835 - - PREDICTED: U-box domain-containing protein 33-like isoform X3 [Jatropha curcas]
20 Hb_000174_140 0.2052931455 - - JHL23J11.8 [Jatropha curcas]

Gene co-expression network

sample Hb_181110_010 Hb_181110_010 Hb_003845_020 Hb_003845_020 Hb_181110_010--Hb_003845_020 Hb_009732_020 Hb_009732_020 Hb_181110_010--Hb_009732_020 Hb_001946_150 Hb_001946_150 Hb_181110_010--Hb_001946_150 Hb_002631_040 Hb_002631_040 Hb_181110_010--Hb_002631_040 Hb_006717_070 Hb_006717_070 Hb_181110_010--Hb_006717_070 Hb_000120_390 Hb_000120_390 Hb_181110_010--Hb_000120_390 Hb_000853_060 Hb_000853_060 Hb_003845_020--Hb_000853_060 Hb_000327_070 Hb_000327_070 Hb_003845_020--Hb_000327_070 Hb_002304_140 Hb_002304_140 Hb_003845_020--Hb_002304_140 Hb_000165_210 Hb_000165_210 Hb_003845_020--Hb_000165_210 Hb_003120_040 Hb_003120_040 Hb_003845_020--Hb_003120_040 Hb_000395_220 Hb_000395_220 Hb_009732_020--Hb_000395_220 Hb_000227_040 Hb_000227_040 Hb_009732_020--Hb_000227_040 Hb_003906_170 Hb_003906_170 Hb_009732_020--Hb_003906_170 Hb_009732_020--Hb_006717_070 Hb_005333_050 Hb_005333_050 Hb_009732_020--Hb_005333_050 Hb_003849_240 Hb_003849_240 Hb_009732_020--Hb_003849_240 Hb_002903_130 Hb_002903_130 Hb_001946_150--Hb_002903_130 Hb_000362_110 Hb_000362_110 Hb_001946_150--Hb_000362_110 Hb_000313_370 Hb_000313_370 Hb_001946_150--Hb_000313_370 Hb_000866_090 Hb_000866_090 Hb_001946_150--Hb_000866_090 Hb_000645_240 Hb_000645_240 Hb_001946_150--Hb_000645_240 Hb_001799_190 Hb_001799_190 Hb_001946_150--Hb_001799_190 Hb_001080_140 Hb_001080_140 Hb_002631_040--Hb_001080_140 Hb_002631_040--Hb_000866_090 Hb_002301_170 Hb_002301_170 Hb_002631_040--Hb_002301_170 Hb_001396_010 Hb_001396_010 Hb_002631_040--Hb_001396_010 Hb_007765_030 Hb_007765_030 Hb_002631_040--Hb_007765_030 Hb_001104_110 Hb_001104_110 Hb_002631_040--Hb_001104_110 Hb_127886_010 Hb_127886_010 Hb_006717_070--Hb_127886_010 Hb_003626_040 Hb_003626_040 Hb_006717_070--Hb_003626_040 Hb_006717_070--Hb_000395_220 Hb_006717_070--Hb_000362_110 Hb_003813_120 Hb_003813_120 Hb_006717_070--Hb_003813_120 Hb_000120_390--Hb_000165_210 Hb_000318_200 Hb_000318_200 Hb_000120_390--Hb_000318_200 Hb_000417_320 Hb_000417_320 Hb_000120_390--Hb_000417_320 Hb_000414_110 Hb_000414_110 Hb_000120_390--Hb_000414_110 Hb_003226_120 Hb_003226_120 Hb_000120_390--Hb_003226_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.66453 9.29987 4.97409 3.03129 2.36295 0.574939
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.87186 1.12622 2.11239 18.9261 2.33843

CAGE analysis