Hb_181235_010

Information

Type transcription factor
Description TF Family: NAC
Location Contig181235: 8794-13177
Sequence    

Annotation

kegg
ID rcu:RCOM_1314760
description transcription factor, putative
nr
ID XP_012086563.1
description PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
swissprot
ID F4JN35
description Protein NTM1-like 9 OS=Arabidopsis thaliana GN=NTL9 PE=1 SV=1
trembl
ID R4NEW2
description NAC transcription factor 055 OS=Jatropha curcas GN=JCGZ_20334 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac domain-containing protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17600: 9269-13166
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_181235_010 0.0 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
2 Hb_002154_030 0.0518113052 - - RNA binding protein, putative [Ricinus communis]
3 Hb_002477_030 0.0673392857 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105631404 isoform X1 [Jatropha curcas]
4 Hb_003777_330 0.0675480484 - - ribonucleoside-diphosphate reductase large chain, putative [Ricinus communis]
5 Hb_000062_240 0.0692524105 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
6 Hb_000032_290 0.0705924202 transcription factor TF Family: RWP-RK PREDICTED: protein NLP7-like [Jatropha curcas]
7 Hb_000406_220 0.0709032428 - - hypothetical protein POPTR_0005s04700g [Populus trichocarpa]
8 Hb_093084_060 0.0719290953 - - PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g64310 [Jatropha curcas]
9 Hb_000291_110 0.0719336551 - - eukaryotic translation initiation factor [Hevea brasiliensis]
10 Hb_000803_190 0.0727966678 - - PREDICTED: THUMP domain-containing protein 1 isoform X1 [Jatropha curcas]
11 Hb_000224_170 0.0739732555 - - hypothetical protein JCGZ_13777 [Jatropha curcas]
12 Hb_007163_090 0.0753167729 - - PREDICTED: protein spt2-like [Jatropha curcas]
13 Hb_001720_050 0.0768000155 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
14 Hb_004837_040 0.078671017 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
15 Hb_023344_030 0.0790200018 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
16 Hb_000152_820 0.0791476378 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Jatropha curcas]
17 Hb_001789_090 0.0792991336 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
18 Hb_002810_020 0.0794870466 - - PREDICTED: pentatricopeptide repeat-containing protein At1g25360 [Jatropha curcas]
19 Hb_000207_390 0.0798622663 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
20 Hb_012634_010 0.0805057041 - - PREDICTED: uncharacterized protein LOC105110292 [Populus euphratica]

Gene co-expression network

sample Hb_181235_010 Hb_181235_010 Hb_002154_030 Hb_002154_030 Hb_181235_010--Hb_002154_030 Hb_002477_030 Hb_002477_030 Hb_181235_010--Hb_002477_030 Hb_003777_330 Hb_003777_330 Hb_181235_010--Hb_003777_330 Hb_000062_240 Hb_000062_240 Hb_181235_010--Hb_000062_240 Hb_000032_290 Hb_000032_290 Hb_181235_010--Hb_000032_290 Hb_000406_220 Hb_000406_220 Hb_181235_010--Hb_000406_220 Hb_000207_390 Hb_000207_390 Hb_002154_030--Hb_000207_390 Hb_002154_030--Hb_000062_240 Hb_000803_190 Hb_000803_190 Hb_002154_030--Hb_000803_190 Hb_001301_200 Hb_001301_200 Hb_002154_030--Hb_001301_200 Hb_007163_090 Hb_007163_090 Hb_002154_030--Hb_007163_090 Hb_001736_040 Hb_001736_040 Hb_002477_030--Hb_001736_040 Hb_000827_070 Hb_000827_070 Hb_002477_030--Hb_000827_070 Hb_000030_040 Hb_000030_040 Hb_002477_030--Hb_000030_040 Hb_001797_050 Hb_001797_050 Hb_002477_030--Hb_001797_050 Hb_005188_050 Hb_005188_050 Hb_002477_030--Hb_005188_050 Hb_001720_050 Hb_001720_050 Hb_003777_330--Hb_001720_050 Hb_000923_020 Hb_000923_020 Hb_003777_330--Hb_000923_020 Hb_004195_160 Hb_004195_160 Hb_003777_330--Hb_004195_160 Hb_000224_170 Hb_000224_170 Hb_003777_330--Hb_000224_170 Hb_082609_020 Hb_082609_020 Hb_003777_330--Hb_082609_020 Hb_004837_040 Hb_004837_040 Hb_000062_240--Hb_004837_040 Hb_001789_090 Hb_001789_090 Hb_000062_240--Hb_001789_090 Hb_002811_360 Hb_002811_360 Hb_000062_240--Hb_002811_360 Hb_000291_110 Hb_000291_110 Hb_000062_240--Hb_000291_110 Hb_000418_100 Hb_000418_100 Hb_000062_240--Hb_000418_100 Hb_015306_020 Hb_015306_020 Hb_000062_240--Hb_015306_020 Hb_000245_130 Hb_000245_130 Hb_000032_290--Hb_000245_130 Hb_000032_290--Hb_000406_220 Hb_018838_030 Hb_018838_030 Hb_000032_290--Hb_018838_030 Hb_000554_020 Hb_000554_020 Hb_000032_290--Hb_000554_020 Hb_006332_020 Hb_006332_020 Hb_000032_290--Hb_006332_020 Hb_000406_220--Hb_000554_020 Hb_000406_220--Hb_001789_090 Hb_011161_010 Hb_011161_010 Hb_000406_220--Hb_011161_010 Hb_002810_020 Hb_002810_020 Hb_000406_220--Hb_002810_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
58.5226 59.4102 19.1696 30.577 77.7028 94.7526
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
58.6393 72.4252 77.6928 45.0832 19.2752

CAGE analysis