Hb_181240_010

Information

Type -
Description -
Location Contig181240: 26685-31295
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa022673mg
description hypothetical protein
nr
ID XP_007220718.1
description hypothetical protein PRUPE_ppa022673mg [Prunus persica]
swissprot
ID P92523
description Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana GN=AtMg00860 PE=4 SV=1
trembl
ID M5X787
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022673mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_181240_010 0.0 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
2 Hb_004734_050 0.1854574144 - - -
3 Hb_000915_030 0.1871131077 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
4 Hb_004324_080 0.2100061738 - - -
5 Hb_014568_020 0.2254453888 - - PREDICTED: GPI mannosyltransferase 2 [Jatropha curcas]
6 Hb_000608_460 0.2281733753 - - -
7 Hb_003005_040 0.2293867416 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_026239_010 0.2628805833 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
9 Hb_004448_060 0.2692296807 - - conserved hypothetical protein [Ricinus communis]
10 Hb_010757_010 0.2775520723 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
11 Hb_000046_160 0.2788267125 - - Pentatricopeptide repeat-containing protein, mitochondrial [Glycine soja]
12 Hb_020334_010 0.280687656 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
13 Hb_011484_010 0.2949497781 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
14 Hb_119504_010 0.2963693464 - - hypothetical protein JCGZ_15304 [Jatropha curcas]
15 Hb_000258_340 0.2988706651 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26900, mitochondrial [Jatropha curcas]
16 Hb_000191_120 0.3005282515 - - -
17 Hb_019656_010 0.3016129935 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_002243_070 0.3054489605 - - sodium-bile acid cotransporter, putative [Ricinus communis]
19 Hb_000399_010 0.3071258639 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
20 Hb_069251_010 0.3101807946 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_181240_010 Hb_181240_010 Hb_004734_050 Hb_004734_050 Hb_181240_010--Hb_004734_050 Hb_000915_030 Hb_000915_030 Hb_181240_010--Hb_000915_030 Hb_004324_080 Hb_004324_080 Hb_181240_010--Hb_004324_080 Hb_014568_020 Hb_014568_020 Hb_181240_010--Hb_014568_020 Hb_000608_460 Hb_000608_460 Hb_181240_010--Hb_000608_460 Hb_003005_040 Hb_003005_040 Hb_181240_010--Hb_003005_040 Hb_003124_060 Hb_003124_060 Hb_004734_050--Hb_003124_060 Hb_004448_060 Hb_004448_060 Hb_004734_050--Hb_004448_060 Hb_004734_050--Hb_000915_030 Hb_042202_050 Hb_042202_050 Hb_004734_050--Hb_042202_050 Hb_011484_010 Hb_011484_010 Hb_004734_050--Hb_011484_010 Hb_000915_030--Hb_014568_020 Hb_000915_030--Hb_000608_460 Hb_000363_150 Hb_000363_150 Hb_000915_030--Hb_000363_150 Hb_000915_030--Hb_004448_060 Hb_000046_160 Hb_000046_160 Hb_004324_080--Hb_000046_160 Hb_004324_080--Hb_000608_460 Hb_004324_080--Hb_003005_040 Hb_004324_080--Hb_004734_050 Hb_004324_080--Hb_014568_020 Hb_014568_020--Hb_000608_460 Hb_002888_010 Hb_002888_010 Hb_014568_020--Hb_002888_010 Hb_014568_020--Hb_000363_150 Hb_000608_460--Hb_002888_010 Hb_000608_460--Hb_004448_060 Hb_006132_030 Hb_006132_030 Hb_003005_040--Hb_006132_030 Hb_003005_040--Hb_004734_050 Hb_001229_020 Hb_001229_020 Hb_003005_040--Hb_001229_020 Hb_043708_010 Hb_043708_010 Hb_003005_040--Hb_043708_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0039849
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0103431 0.0244193 0.0312829 0.00322335 0.0349066

CAGE analysis