Hb_181288_010

Information

Type -
Description -
Location Contig181288: 513-4101
Sequence    

Annotation

kegg
ID rcu:RCOM_1431430
description rac-GTP binding protein, putative
nr
ID XP_002512373.1
description rac-GTP binding protein, putative [Ricinus communis]
swissprot
ID Q8RXF8
description Mitochondrial Rho GTPase 1 OS=Arabidopsis thaliana GN=MIRO1 PE=1 SV=1
trembl
ID B9RF54
description Rac-GTP binding protein, putative OS=Ricinus communis GN=RCOM_1431430 PE=4 SV=1
Gene Ontology
ID GO:0005741
description mitochondrial rho gtpase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_181288_010 0.0 - - rac-GTP binding protein, putative [Ricinus communis]
2 Hb_019249_010 0.0725023115 - - PREDICTED: origin of replication complex subunit 2 [Jatropha curcas]
3 Hb_128048_010 0.0739181476 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
4 Hb_004204_120 0.0758842185 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
5 Hb_033594_110 0.0815160971 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
6 Hb_002518_050 0.081838541 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
7 Hb_002105_090 0.0826650786 - - Rab4 [Hevea brasiliensis]
8 Hb_010407_040 0.0829941827 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Nelumbo nucifera]
9 Hb_000926_300 0.0837713594 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
10 Hb_032202_090 0.0845309343 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Jatropha curcas]
11 Hb_001278_110 0.085964173 - - PREDICTED: uncharacterized protein LOC104613296 isoform X3 [Nelumbo nucifera]
12 Hb_000630_060 0.0866946063 - - PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial [Jatropha curcas]
13 Hb_002685_190 0.0867547431 transcription factor TF Family: SET PREDICTED: probable zinc metalloprotease EGY1, chloroplastic [Jatropha curcas]
14 Hb_004297_070 0.0873342531 - - hypothetical protein POPTR_0009s14820g [Populus trichocarpa]
15 Hb_070986_010 0.0912769509 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
16 Hb_001016_030 0.0914372864 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
17 Hb_004934_110 0.0921365509 transcription factor TF Family: HMG hypothetical protein B456_002G115100 [Gossypium raimondii]
18 Hb_000251_070 0.0930618603 - - hypothetical protein L484_010641 [Morus notabilis]
19 Hb_002890_140 0.0932565736 - - PREDICTED: uncharacterized protein LOC100263805 [Vitis vinifera]
20 Hb_001377_150 0.0933855508 - - hypothetical protein JCGZ_14266 [Jatropha curcas]

Gene co-expression network

sample Hb_181288_010 Hb_181288_010 Hb_019249_010 Hb_019249_010 Hb_181288_010--Hb_019249_010 Hb_128048_010 Hb_128048_010 Hb_181288_010--Hb_128048_010 Hb_004204_120 Hb_004204_120 Hb_181288_010--Hb_004204_120 Hb_033594_110 Hb_033594_110 Hb_181288_010--Hb_033594_110 Hb_002518_050 Hb_002518_050 Hb_181288_010--Hb_002518_050 Hb_002105_090 Hb_002105_090 Hb_181288_010--Hb_002105_090 Hb_019249_010--Hb_128048_010 Hb_002289_120 Hb_002289_120 Hb_019249_010--Hb_002289_120 Hb_001814_070 Hb_001814_070 Hb_019249_010--Hb_001814_070 Hb_001817_090 Hb_001817_090 Hb_019249_010--Hb_001817_090 Hb_003878_010 Hb_003878_010 Hb_019249_010--Hb_003878_010 Hb_000926_300 Hb_000926_300 Hb_128048_010--Hb_000926_300 Hb_000000_170 Hb_000000_170 Hb_128048_010--Hb_000000_170 Hb_002811_260 Hb_002811_260 Hb_128048_010--Hb_002811_260 Hb_175215_010 Hb_175215_010 Hb_128048_010--Hb_175215_010 Hb_128048_010--Hb_003878_010 Hb_002685_190 Hb_002685_190 Hb_004204_120--Hb_002685_190 Hb_002030_040 Hb_002030_040 Hb_004204_120--Hb_002030_040 Hb_001235_190 Hb_001235_190 Hb_004204_120--Hb_001235_190 Hb_070986_010 Hb_070986_010 Hb_004204_120--Hb_070986_010 Hb_000120_750 Hb_000120_750 Hb_004204_120--Hb_000120_750 Hb_000798_030 Hb_000798_030 Hb_004204_120--Hb_000798_030 Hb_000630_060 Hb_000630_060 Hb_033594_110--Hb_000630_060 Hb_003126_090 Hb_003126_090 Hb_033594_110--Hb_003126_090 Hb_165132_010 Hb_165132_010 Hb_033594_110--Hb_165132_010 Hb_134949_020 Hb_134949_020 Hb_033594_110--Hb_134949_020 Hb_145880_030 Hb_145880_030 Hb_033594_110--Hb_145880_030 Hb_001016_030 Hb_001016_030 Hb_033594_110--Hb_001016_030 Hb_000510_110 Hb_000510_110 Hb_002518_050--Hb_000510_110 Hb_012573_070 Hb_012573_070 Hb_002518_050--Hb_012573_070 Hb_003018_120 Hb_003018_120 Hb_002518_050--Hb_003018_120 Hb_002518_050--Hb_165132_010 Hb_000970_010 Hb_000970_010 Hb_002518_050--Hb_000970_010 Hb_001818_020 Hb_001818_020 Hb_002518_050--Hb_001818_020 Hb_000494_020 Hb_000494_020 Hb_002105_090--Hb_000494_020 Hb_004324_310 Hb_004324_310 Hb_002105_090--Hb_004324_310 Hb_032717_080 Hb_032717_080 Hb_002105_090--Hb_032717_080 Hb_002105_090--Hb_070986_010 Hb_001184_090 Hb_001184_090 Hb_002105_090--Hb_001184_090 Hb_010407_040 Hb_010407_040 Hb_002105_090--Hb_010407_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.26407 2.7591 3.26186 3.83293 5.23149 6.6253
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.695 11.6973 3.29744 2.66049 2.62966

CAGE analysis