Hb_181288_020

Information

Type -
Description -
Location Contig181288: 2515-3989
Sequence    

Annotation

kegg
ID cic:CICLE_v10001869mg
description hypothetical protein
nr
ID XP_006433314.1
description hypothetical protein CICLE_v10001869mg [Citrus clementina]
swissprot
ID Q9MA90
description Peroxisomal adenine nucleotide carrier 1 OS=Arabidopsis thaliana GN=PNC1 PE=1 SV=1
trembl
ID A0A067EYM0
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g021007mg PE=3 SV=1
Gene Ontology
ID GO:0016021
description peroxisomal adenine nucleotide carrier 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_181288_020 0.0 - - hypothetical protein CICLE_v10001869mg [Citrus clementina]
2 Hb_000510_320 0.075157878 - - PREDICTED: uncharacterized protein LOC105649907 [Jatropha curcas]
3 Hb_000046_320 0.0867507366 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
4 Hb_004724_080 0.0886432877 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003683_160 0.0890456799 - - PREDICTED: uncharacterized protein LOC105650622 [Jatropha curcas]
6 Hb_000086_400 0.0915147394 - - calmodulin binding protein, putative [Ricinus communis]
7 Hb_000749_220 0.0936965555 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
8 Hb_002105_040 0.0937209408 - - -
9 Hb_000777_040 0.0946706278 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
10 Hb_000175_460 0.0955448388 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
11 Hb_004324_070 0.0958239588 - - protein phosphatase 2C [Hevea brasiliensis]
12 Hb_001009_270 0.0985682339 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
13 Hb_008300_010 0.0989545814 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG13 homolog [Jatropha curcas]
14 Hb_003177_030 0.0990330908 - - PREDICTED: uncharacterized protein LOC105635357 [Jatropha curcas]
15 Hb_032264_110 0.0990971865 - - PREDICTED: uncharacterized protein LOC105648219 [Jatropha curcas]
16 Hb_085863_030 0.0998251964 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31430 [Jatropha curcas]
17 Hb_019280_040 0.1001816861 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_000069_110 0.1025767655 - - PREDICTED: nephrocystin-3-like isoform X2 [Jatropha curcas]
19 Hb_004738_040 0.1026158684 - - PREDICTED: serine/threonine-protein kinase EDR1-like isoform X2 [Populus euphratica]
20 Hb_002200_080 0.1029528363 - - PREDICTED: uncharacterized protein C57A10.07 [Jatropha curcas]

Gene co-expression network

sample Hb_181288_020 Hb_181288_020 Hb_000510_320 Hb_000510_320 Hb_181288_020--Hb_000510_320 Hb_000046_320 Hb_000046_320 Hb_181288_020--Hb_000046_320 Hb_004724_080 Hb_004724_080 Hb_181288_020--Hb_004724_080 Hb_003683_160 Hb_003683_160 Hb_181288_020--Hb_003683_160 Hb_000086_400 Hb_000086_400 Hb_181288_020--Hb_000086_400 Hb_000749_220 Hb_000749_220 Hb_181288_020--Hb_000749_220 Hb_002105_040 Hb_002105_040 Hb_000510_320--Hb_002105_040 Hb_000175_460 Hb_000175_460 Hb_000510_320--Hb_000175_460 Hb_000510_320--Hb_000086_400 Hb_004738_040 Hb_004738_040 Hb_000510_320--Hb_004738_040 Hb_000876_070 Hb_000876_070 Hb_000510_320--Hb_000876_070 Hb_007904_260 Hb_007904_260 Hb_000046_320--Hb_007904_260 Hb_000985_030 Hb_000985_030 Hb_000046_320--Hb_000985_030 Hb_000777_040 Hb_000777_040 Hb_000046_320--Hb_000777_040 Hb_000046_320--Hb_000749_220 Hb_003177_030 Hb_003177_030 Hb_000046_320--Hb_003177_030 Hb_002998_060 Hb_002998_060 Hb_000046_320--Hb_002998_060 Hb_000928_210 Hb_000928_210 Hb_004724_080--Hb_000928_210 Hb_002739_100 Hb_002739_100 Hb_004724_080--Hb_002739_100 Hb_017358_030 Hb_017358_030 Hb_004724_080--Hb_017358_030 Hb_004724_080--Hb_000876_070 Hb_004724_080--Hb_002105_040 Hb_000003_250 Hb_000003_250 Hb_004724_080--Hb_000003_250 Hb_004324_070 Hb_004324_070 Hb_003683_160--Hb_004324_070 Hb_188279_010 Hb_188279_010 Hb_003683_160--Hb_188279_010 Hb_000069_110 Hb_000069_110 Hb_003683_160--Hb_000069_110 Hb_000080_190 Hb_000080_190 Hb_003683_160--Hb_000080_190 Hb_011571_010 Hb_011571_010 Hb_003683_160--Hb_011571_010 Hb_085863_030 Hb_085863_030 Hb_000086_400--Hb_085863_030 Hb_000000_250 Hb_000000_250 Hb_000086_400--Hb_000000_250 Hb_009178_030 Hb_009178_030 Hb_000086_400--Hb_009178_030 Hb_000086_400--Hb_000175_460 Hb_000086_400--Hb_000876_070 Hb_000749_220--Hb_003177_030 Hb_000172_290 Hb_000172_290 Hb_000749_220--Hb_000172_290 Hb_000477_060 Hb_000477_060 Hb_000749_220--Hb_000477_060 Hb_000749_220--Hb_000003_250 Hb_005490_030 Hb_005490_030 Hb_000749_220--Hb_005490_030 Hb_001159_130 Hb_001159_130 Hb_000749_220--Hb_001159_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.79603 1.16785 1.86463 3.18275 3.48008 3.71782
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.33421 5.04723 6.17425 1.96795 1.87175

CAGE analysis