Hb_181320_010

Information

Type -
Description -
Location Contig181320: 144-782
Sequence    

Annotation

kegg
ID cmo:103487869
description signal recognition particle 14 kDa protein
nr
ID XP_012065075.1
description PREDICTED: signal recognition particle 14 kDa protein [Jatropha curcas]
swissprot
ID O04421
description Signal recognition particle 14 kDa protein OS=Arabidopsis thaliana GN=SRP14 PE=2 SV=2
trembl
ID A0A0A0LYE0
description Uncharacterized protein OS=Cucumis sativus GN=Csa_1G534730 PE=4 SV=1
Gene Ontology
ID GO:0005786
description signal recognition particle 14 kda protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_181320_010 0.0 - - PREDICTED: signal recognition particle 14 kDa protein [Jatropha curcas]
2 Hb_176117_010 0.0774459229 - - Cold-inducible RNA-binding protein [Morus notabilis]
3 Hb_144898_010 0.107554477 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
4 Hb_005016_150 0.1214314465 - - -
5 Hb_004662_010 0.1326776449 - - Nascent polypeptide-associated complex subunit beta [Medicago truncatula]
6 Hb_000891_040 0.1410156499 - - hypothetical protein JCGZ_11252 [Jatropha curcas]
7 Hb_000270_500 0.1458332824 - - PREDICTED: uncharacterized protein LOC105640439 [Jatropha curcas]
8 Hb_001523_010 0.1504648299 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_25496 [Jatropha curcas]
9 Hb_002955_010 0.1534246348 - - PREDICTED: Werner syndrome ATP-dependent helicase homolog [Jatropha curcas]
10 Hb_001252_170 0.1540081695 desease resistance Gene Name: Exostosin hypothetical protein PRUPE_ppa001357mg [Prunus persica]
11 Hb_002837_070 0.156662729 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 8-like isoform X1 [Jatropha curcas]
12 Hb_012807_080 0.1575547695 - - hypothetical protein CICLE_v10028099mg [Citrus clementina]
13 Hb_005217_020 0.1592164894 - - PREDICTED: ribosomal RNA processing protein 36 homolog isoform X2 [Jatropha curcas]
14 Hb_073339_010 0.1598160596 - - hypothetical protein 30 [Hevea brasiliensis]
15 Hb_000213_060 0.1635679996 - - PREDICTED: RRP12-like protein isoform X1 [Jatropha curcas]
16 Hb_000172_530 0.1647844132 - - PREDICTED: UBP1-associated protein 2B-like isoform X1 [Jatropha curcas]
17 Hb_000953_060 0.1652978366 - - PREDICTED: putative phytosulfokines 6 [Vitis vinifera]
18 Hb_000466_060 0.1656798304 - - phosphofructokinase [Hevea brasiliensis]
19 Hb_003633_130 0.1667222648 - - PREDICTED: uncharacterized protein LOC105647466 [Jatropha curcas]
20 Hb_000256_270 0.1669714038 - - PREDICTED: large proline-rich protein bag6-B isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_181320_010 Hb_181320_010 Hb_176117_010 Hb_176117_010 Hb_181320_010--Hb_176117_010 Hb_144898_010 Hb_144898_010 Hb_181320_010--Hb_144898_010 Hb_005016_150 Hb_005016_150 Hb_181320_010--Hb_005016_150 Hb_004662_010 Hb_004662_010 Hb_181320_010--Hb_004662_010 Hb_000891_040 Hb_000891_040 Hb_181320_010--Hb_000891_040 Hb_000270_500 Hb_000270_500 Hb_181320_010--Hb_000270_500 Hb_176117_010--Hb_005016_150 Hb_176117_010--Hb_000270_500 Hb_176117_010--Hb_144898_010 Hb_000200_040 Hb_000200_040 Hb_176117_010--Hb_000200_040 Hb_183980_010 Hb_183980_010 Hb_176117_010--Hb_183980_010 Hb_000107_140 Hb_000107_140 Hb_144898_010--Hb_000107_140 Hb_005305_060 Hb_005305_060 Hb_144898_010--Hb_005305_060 Hb_001722_020 Hb_001722_020 Hb_144898_010--Hb_001722_020 Hb_005054_070 Hb_005054_070 Hb_144898_010--Hb_005054_070 Hb_012807_080 Hb_012807_080 Hb_144898_010--Hb_012807_080 Hb_001675_060 Hb_001675_060 Hb_005016_150--Hb_001675_060 Hb_000213_060 Hb_000213_060 Hb_005016_150--Hb_000213_060 Hb_001477_010 Hb_001477_010 Hb_005016_150--Hb_001477_010 Hb_003226_170 Hb_003226_170 Hb_005016_150--Hb_003226_170 Hb_000256_270 Hb_000256_270 Hb_005016_150--Hb_000256_270 Hb_004241_040 Hb_004241_040 Hb_004662_010--Hb_004241_040 Hb_004662_010--Hb_144898_010 Hb_012305_040 Hb_012305_040 Hb_004662_010--Hb_012305_040 Hb_175612_010 Hb_175612_010 Hb_004662_010--Hb_175612_010 Hb_005217_020 Hb_005217_020 Hb_004662_010--Hb_005217_020 Hb_006637_060 Hb_006637_060 Hb_000891_040--Hb_006637_060 Hb_007632_250 Hb_007632_250 Hb_000891_040--Hb_007632_250 Hb_119583_010 Hb_119583_010 Hb_000891_040--Hb_119583_010 Hb_000510_090 Hb_000510_090 Hb_000891_040--Hb_000510_090 Hb_000442_100 Hb_000442_100 Hb_000891_040--Hb_000442_100 Hb_094647_010 Hb_094647_010 Hb_000270_500--Hb_094647_010 Hb_080530_020 Hb_080530_020 Hb_000270_500--Hb_080530_020 Hb_000270_500--Hb_005016_150 Hb_007827_020 Hb_007827_020 Hb_000270_500--Hb_007827_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
541.841 83.8805 73.2676 78.2489 379.653 1116.01
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
237.168 261.447 83.4919 77.3708 4.12839

CAGE analysis