Hb_181328_010

Information

Type -
Description -
Location Contig181328: 364-3643
Sequence    

Annotation

kegg
ID rcu:RCOM_0502430
description hypothetical protein
nr
ID XP_012082579.1
description PREDICTED: ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KBU6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16658 PE=4 SV=1
Gene Ontology
ID GO:0016491
description ferredoxin-dependent glutamate chloroplastic isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_181328_010 0.0 - - PREDICTED: ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_002611_020 0.0959651651 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like [Populus euphratica]
3 Hb_013358_090 0.1083180688 - - hypothetical protein Csa_4G652025 [Cucumis sativus]
4 Hb_002400_330 0.1094234032 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
5 Hb_106415_010 0.1314187315 - - PREDICTED: snRNA-activating protein complex subunit isoform X1 [Jatropha curcas]
6 Hb_086765_010 0.1337535225 - - PREDICTED: nitrile-specifier protein 5-like [Jatropha curcas]
7 Hb_050912_010 0.1364821614 - - PREDICTED: amidase 1-like isoform X2 [Jatropha curcas]
8 Hb_013358_080 0.1367161082 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 25-like [Jatropha curcas]
9 Hb_181441_010 0.13902618 - - PREDICTED: uncharacterized protein LOC105640851 [Jatropha curcas]
10 Hb_008484_010 0.1395560935 - - hypothetical protein B456_008G050700 [Gossypium raimondii]
11 Hb_102591_010 0.1399636819 - - hypothetical protein JCGZ_09876 [Jatropha curcas]
12 Hb_000230_180 0.1418127968 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
13 Hb_099878_050 0.1449815603 - - PREDICTED: uncharacterized protein LOC105123495 isoform X2 [Populus euphratica]
14 Hb_005170_010 0.1449918352 - - -
15 Hb_009119_040 0.1462548594 - - PREDICTED: tobamovirus multiplication protein 2A [Jatropha curcas]
16 Hb_007026_040 0.1465296005 - - PREDICTED: chaperonin 60 subunit alpha 2, chloroplastic-like [Eucalyptus grandis]
17 Hb_165402_010 0.1497383281 - - PREDICTED: cullin-1 isoform X3 [Nicotiana sylvestris]
18 Hb_028707_080 0.1505134765 - - plasma membrane aquaporin 1 [Hevea brasiliensis]
19 Hb_007333_040 0.1516173374 - - PREDICTED: proline-rich receptor-like protein kinase PERK1-like [Glycine max]
20 Hb_006629_010 0.1519569143 - - Glutathione S-transferase 2 isoform 3 [Theobroma cacao]

Gene co-expression network

sample Hb_181328_010 Hb_181328_010 Hb_002611_020 Hb_002611_020 Hb_181328_010--Hb_002611_020 Hb_013358_090 Hb_013358_090 Hb_181328_010--Hb_013358_090 Hb_002400_330 Hb_002400_330 Hb_181328_010--Hb_002400_330 Hb_106415_010 Hb_106415_010 Hb_181328_010--Hb_106415_010 Hb_086765_010 Hb_086765_010 Hb_181328_010--Hb_086765_010 Hb_050912_010 Hb_050912_010 Hb_181328_010--Hb_050912_010 Hb_000230_180 Hb_000230_180 Hb_002611_020--Hb_000230_180 Hb_002611_020--Hb_002400_330 Hb_002122_010 Hb_002122_010 Hb_002611_020--Hb_002122_010 Hb_005170_010 Hb_005170_010 Hb_002611_020--Hb_005170_010 Hb_000696_010 Hb_000696_010 Hb_002611_020--Hb_000696_010 Hb_013358_080 Hb_013358_080 Hb_013358_090--Hb_013358_080 Hb_099878_050 Hb_099878_050 Hb_013358_090--Hb_099878_050 Hb_000053_030 Hb_000053_030 Hb_013358_090--Hb_000053_030 Hb_002027_180 Hb_002027_180 Hb_013358_090--Hb_002027_180 Hb_004040_030 Hb_004040_030 Hb_013358_090--Hb_004040_030 Hb_008484_010 Hb_008484_010 Hb_002400_330--Hb_008484_010 Hb_041828_010 Hb_041828_010 Hb_002400_330--Hb_041828_010 Hb_002400_330--Hb_050912_010 Hb_149225_010 Hb_149225_010 Hb_002400_330--Hb_149225_010 Hb_004659_020 Hb_004659_020 Hb_002400_330--Hb_004659_020 Hb_106415_010--Hb_099878_050 Hb_033385_010 Hb_033385_010 Hb_106415_010--Hb_033385_010 Hb_007083_020 Hb_007083_020 Hb_106415_010--Hb_007083_020 Hb_019053_010 Hb_019053_010 Hb_106415_010--Hb_019053_010 Hb_007333_040 Hb_007333_040 Hb_106415_010--Hb_007333_040 Hb_000825_030 Hb_000825_030 Hb_106415_010--Hb_000825_030 Hb_086765_010--Hb_013358_090 Hb_086765_010--Hb_002027_180 Hb_086765_010--Hb_013358_080 Hb_116420_040 Hb_116420_040 Hb_086765_010--Hb_116420_040 Hb_102591_010 Hb_102591_010 Hb_086765_010--Hb_102591_010 Hb_006541_040 Hb_006541_040 Hb_050912_010--Hb_006541_040 Hb_134429_010 Hb_134429_010 Hb_050912_010--Hb_134429_010 Hb_005015_060 Hb_005015_060 Hb_050912_010--Hb_005015_060 Hb_161994_030 Hb_161994_030 Hb_050912_010--Hb_161994_030 Hb_000056_130 Hb_000056_130 Hb_050912_010--Hb_000056_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.27969 3.35136 3.20934 11.4646 4.33056 13.5809
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.25764 1.18146 1.51473 5.63988 4.30966

CAGE analysis