Hb_181402_010

Information

Type -
Description -
Location Contig181402: 2089-3164
Sequence    

Annotation

kegg
ID bvg:104905886
description uncharacterized LOC104905886
nr
ID XP_010692841.1
description PREDICTED: uncharacterized protein LOC104905886 [Beta vulgaris subsp. vulgaris]
swissprot
ID P0C2F6
description Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1
trembl
ID F4NCH2
description Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_181402_010 0.0 - - PREDICTED: uncharacterized protein LOC104905886 [Beta vulgaris subsp. vulgaris]
2 Hb_003717_020 0.1939722363 - - -
3 Hb_004981_010 0.2358134574 - - -
4 Hb_055314_010 0.2537748714 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
5 Hb_001758_030 0.2558420676 - - hypothetical protein JCGZ_09181 [Jatropha curcas]
6 Hb_042463_050 0.2573296287 - - conserved hypothetical protein [Ricinus communis]
7 Hb_027204_010 0.2648894817 - - -
8 Hb_001205_170 0.2711731158 - - PREDICTED: uncharacterized protein LOC105633940 isoform X1 [Jatropha curcas]
9 Hb_005174_010 0.2720050675 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_000640_280 0.2731752502 - - Stachyose synthase precursor, putative [Ricinus communis]
11 Hb_024468_040 0.2801337018 - - -
12 Hb_004678_070 0.2810370754 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
13 Hb_006043_030 0.2812444579 - - polyprotein [Citrus endogenous pararetrovirus]
14 Hb_000002_090 0.2844560553 - - PREDICTED: RING-H2 finger protein ATL8-like isoform X2 [Jatropha curcas]
15 Hb_006040_040 0.2845882031 - - Putative mitochondrial protein [Glycine soja]
16 Hb_005401_010 0.284649266 - - -
17 Hb_001999_050 0.2855151161 rubber biosynthesis Gene Name: CPT7 PREDICTED: dehydrodolichyl diphosphate synthase 2 [Jatropha curcas]
18 Hb_002890_350 0.2906382216 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
19 Hb_009785_020 0.2922857327 - - PREDICTED: nucleolin [Populus euphratica]
20 Hb_004884_210 0.2935026429 - - PREDICTED: mitoferrin-like [Jatropha curcas]

Gene co-expression network

sample Hb_181402_010 Hb_181402_010 Hb_003717_020 Hb_003717_020 Hb_181402_010--Hb_003717_020 Hb_004981_010 Hb_004981_010 Hb_181402_010--Hb_004981_010 Hb_055314_010 Hb_055314_010 Hb_181402_010--Hb_055314_010 Hb_001758_030 Hb_001758_030 Hb_181402_010--Hb_001758_030 Hb_042463_050 Hb_042463_050 Hb_181402_010--Hb_042463_050 Hb_027204_010 Hb_027204_010 Hb_181402_010--Hb_027204_010 Hb_003717_020--Hb_004981_010 Hb_065395_020 Hb_065395_020 Hb_003717_020--Hb_065395_020 Hb_001021_050 Hb_001021_050 Hb_003717_020--Hb_001021_050 Hb_000045_060 Hb_000045_060 Hb_003717_020--Hb_000045_060 Hb_111985_030 Hb_111985_030 Hb_003717_020--Hb_111985_030 Hb_004981_010--Hb_065395_020 Hb_004981_010--Hb_001021_050 Hb_004981_010--Hb_001758_030 Hb_004981_010--Hb_000045_060 Hb_003127_050 Hb_003127_050 Hb_055314_010--Hb_003127_050 Hb_034013_010 Hb_034013_010 Hb_055314_010--Hb_034013_010 Hb_000002_090 Hb_000002_090 Hb_055314_010--Hb_000002_090 Hb_000039_120 Hb_000039_120 Hb_055314_010--Hb_000039_120 Hb_010055_020 Hb_010055_020 Hb_055314_010--Hb_010055_020 Hb_097981_010 Hb_097981_010 Hb_001758_030--Hb_097981_010 Hb_004678_070 Hb_004678_070 Hb_001758_030--Hb_004678_070 Hb_105123_020 Hb_105123_020 Hb_001758_030--Hb_105123_020 Hb_001758_030--Hb_003717_020 Hb_004884_210 Hb_004884_210 Hb_042463_050--Hb_004884_210 Hb_024468_040 Hb_024468_040 Hb_042463_050--Hb_024468_040 Hb_172426_010 Hb_172426_010 Hb_042463_050--Hb_172426_010 Hb_004372_050 Hb_004372_050 Hb_042463_050--Hb_004372_050 Hb_001999_050 Hb_001999_050 Hb_042463_050--Hb_001999_050 Hb_002030_050 Hb_002030_050 Hb_042463_050--Hb_002030_050 Hb_065661_010 Hb_065661_010 Hb_027204_010--Hb_065661_010 Hb_027204_010--Hb_024468_040 Hb_027204_010--Hb_000045_060 Hb_000392_510 Hb_000392_510 Hb_027204_010--Hb_000392_510 Hb_000640_280 Hb_000640_280 Hb_027204_010--Hb_000640_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.425375 0.0354887 0.0427711 0 0.130931
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.463803

CAGE analysis