Hb_181463_020

Information

Type -
Description -
Location Contig181463: 4244-5827
Sequence    

Annotation

kegg
ID tcc:TCM_006823
description Beta-galactosidase 3 isoform 1
nr
ID KDP41747.1
description hypothetical protein JCGZ_26765 [Jatropha curcas]
swissprot
ID Q9SCV9
description Beta-galactosidase 3 OS=Arabidopsis thaliana GN=BGAL3 PE=1 SV=1
trembl
ID A0A067L023
description Beta-galactosidase OS=Jatropha curcas GN=JCGZ_26765 PE=3 SV=1
Gene Ontology
ID GO:0004553
description beta-galactosidase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17652: 4612-5614
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_181463_020 0.0 - - hypothetical protein JCGZ_26765 [Jatropha curcas]
2 Hb_000237_120 0.0843209333 - - PREDICTED: beta-galactosidase 3-like [Jatropha curcas]
3 Hb_000054_130 0.0948162035 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
4 Hb_001109_170 0.1114054209 - - PREDICTED: urea-proton symporter DUR3 isoform X2 [Jatropha curcas]
5 Hb_001622_020 0.1155781892 - - -
6 Hb_032143_010 0.1193513 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
7 Hb_167211_010 0.1197940652 - - PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]
8 Hb_001369_270 0.1438352776 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_001248_140 0.1463520018 - - Thylakoid lumenal 19 kDa protein, chloroplast precursor, putative [Ricinus communis]
10 Hb_124579_020 0.1466843008 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
11 Hb_006142_050 0.1502520934 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
12 Hb_097783_030 0.1533365828 - - PREDICTED: probable peroxidase 61 [Jatropha curcas]
13 Hb_182424_020 0.1540269659 - - hypothetical protein POPTR_0006s24190g [Populus trichocarpa]
14 Hb_001778_040 0.1555378269 - - hypothetical protein VITISV_021035 [Vitis vinifera]
15 Hb_000265_030 0.1583269453 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
16 Hb_005332_050 0.1596782125 - - hypothetical protein POPTR_0017s10650g [Populus trichocarpa]
17 Hb_060152_010 0.1598920669 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
18 Hb_110737_010 0.1611059502 - - PREDICTED: aldose 1-epimerase-like [Jatropha curcas]
19 Hb_010264_010 0.1612666281 - - PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1-like [Jatropha curcas]
20 Hb_010311_020 0.1616426151 - - lrr receptor protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_181463_020 Hb_181463_020 Hb_000237_120 Hb_000237_120 Hb_181463_020--Hb_000237_120 Hb_000054_130 Hb_000054_130 Hb_181463_020--Hb_000054_130 Hb_001109_170 Hb_001109_170 Hb_181463_020--Hb_001109_170 Hb_001622_020 Hb_001622_020 Hb_181463_020--Hb_001622_020 Hb_032143_010 Hb_032143_010 Hb_181463_020--Hb_032143_010 Hb_167211_010 Hb_167211_010 Hb_181463_020--Hb_167211_010 Hb_006142_050 Hb_006142_050 Hb_000237_120--Hb_006142_050 Hb_000237_120--Hb_167211_010 Hb_000237_120--Hb_001109_170 Hb_000237_120--Hb_001622_020 Hb_000237_120--Hb_032143_010 Hb_000054_130--Hb_001622_020 Hb_000054_130--Hb_167211_010 Hb_001778_040 Hb_001778_040 Hb_000054_130--Hb_001778_040 Hb_000054_130--Hb_001109_170 Hb_000054_130--Hb_000237_120 Hb_001109_170--Hb_167211_010 Hb_110737_010 Hb_110737_010 Hb_001109_170--Hb_110737_010 Hb_010311_020 Hb_010311_020 Hb_001109_170--Hb_010311_020 Hb_000416_010 Hb_000416_010 Hb_001109_170--Hb_000416_010 Hb_124579_020 Hb_124579_020 Hb_001109_170--Hb_124579_020 Hb_001622_020--Hb_001778_040 Hb_000254_060 Hb_000254_060 Hb_001622_020--Hb_000254_060 Hb_001622_020--Hb_167211_010 Hb_060152_010 Hb_060152_010 Hb_001622_020--Hb_060152_010 Hb_168319_060 Hb_168319_060 Hb_001622_020--Hb_168319_060 Hb_010264_010 Hb_010264_010 Hb_032143_010--Hb_010264_010 Hb_000265_030 Hb_000265_030 Hb_032143_010--Hb_000265_030 Hb_001104_220 Hb_001104_220 Hb_032143_010--Hb_001104_220 Hb_005622_040 Hb_005622_040 Hb_032143_010--Hb_005622_040 Hb_032143_010--Hb_006142_050 Hb_167211_010--Hb_001778_040 Hb_167211_010--Hb_124579_020 Hb_005332_050 Hb_005332_050 Hb_167211_010--Hb_005332_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.051678 0.502102 2.20631 6.38909 0.0242283 0.0527074
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0932981 0 5.36435 11.5294

CAGE analysis