Hb_181600_010

Information

Type -
Description -
Location Contig181600: 1202-2494
Sequence    

Annotation

kegg
ID rcu:RCOM_0437800
description hypothetical protein
nr
ID XP_012074325.1
description PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
swissprot
ID Q8RWM3
description Mediator of RNA polymerase II transcription subunit 27 OS=Arabidopsis thaliana GN=MED27 PE=1 SV=1
trembl
ID A0A067KW98
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08763 PE=4 SV=1
Gene Ontology
ID GO:0016592
description mediator of rna polymerase ii transcription subunit 27

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_181600_010 0.0 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
2 Hb_048476_050 0.0794640398 - - semialdehyde dehydrogenase family protein [Populus trichocarpa]
3 Hb_003097_210 0.098465396 - - PREDICTED: uncharacterized protein LOC105631194 isoform X1 [Jatropha curcas]
4 Hb_001545_080 0.0987595374 - - PREDICTED: tRNA pseudouridine(38/39) synthase isoform X3 [Jatropha curcas]
5 Hb_001688_020 0.1002178491 - - PREDICTED: uncharacterized protein LOC103438026 [Malus domestica]
6 Hb_155764_010 0.1061735129 - - -
7 Hb_000260_810 0.1081478935 - - -
8 Hb_002835_100 0.1131565496 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 6-like [Jatropha curcas]
9 Hb_000010_470 0.1148177244 - - Galactose oxidase/kelch repeat superfamily protein isoform 2 [Theobroma cacao]
10 Hb_001360_050 0.1148871569 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
11 Hb_000010_460 0.1173154274 - - hypothetical protein EUGRSUZ_B001502, partial [Eucalyptus grandis]
12 Hb_012114_040 0.1174095912 - - DNA binding protein, putative [Ricinus communis]
13 Hb_010560_040 0.1199238023 - - PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Jatropha curcas]
14 Hb_006907_130 0.120111898 - - unnamed protein product [Coffea canephora]
15 Hb_005914_010 0.121141436 - - PREDICTED: peroxisomal membrane protein PMP22 [Jatropha curcas]
16 Hb_000742_110 0.1214235538 - - hypothetical protein JCGZ_09215 [Jatropha curcas]
17 Hb_001484_010 0.1226752642 - - hypothetical protein POPTR_0005s07440g [Populus trichocarpa]
18 Hb_005183_120 0.1241126561 - - protein translocase, putative [Ricinus communis]
19 Hb_010080_090 0.1245429442 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Jatropha curcas]
20 Hb_000317_410 0.1251121977 - - PREDICTED: UDP-glycosyltransferase 73C5-like [Jatropha curcas]

Gene co-expression network

sample Hb_181600_010 Hb_181600_010 Hb_048476_050 Hb_048476_050 Hb_181600_010--Hb_048476_050 Hb_003097_210 Hb_003097_210 Hb_181600_010--Hb_003097_210 Hb_001545_080 Hb_001545_080 Hb_181600_010--Hb_001545_080 Hb_001688_020 Hb_001688_020 Hb_181600_010--Hb_001688_020 Hb_155764_010 Hb_155764_010 Hb_181600_010--Hb_155764_010 Hb_000260_810 Hb_000260_810 Hb_181600_010--Hb_000260_810 Hb_116898_010 Hb_116898_010 Hb_048476_050--Hb_116898_010 Hb_048476_050--Hb_155764_010 Hb_010560_040 Hb_010560_040 Hb_048476_050--Hb_010560_040 Hb_000010_470 Hb_000010_470 Hb_048476_050--Hb_000010_470 Hb_048476_050--Hb_003097_210 Hb_003097_210--Hb_155764_010 Hb_003097_210--Hb_010560_040 Hb_003097_210--Hb_001688_020 Hb_003226_280 Hb_003226_280 Hb_003097_210--Hb_003226_280 Hb_000363_200 Hb_000363_200 Hb_003097_210--Hb_000363_200 Hb_000865_070 Hb_000865_070 Hb_003097_210--Hb_000865_070 Hb_003050_220 Hb_003050_220 Hb_001545_080--Hb_003050_220 Hb_155159_030 Hb_155159_030 Hb_001545_080--Hb_155159_030 Hb_127552_030 Hb_127552_030 Hb_001545_080--Hb_127552_030 Hb_006907_130 Hb_006907_130 Hb_001545_080--Hb_006907_130 Hb_005183_120 Hb_005183_120 Hb_001545_080--Hb_005183_120 Hb_001006_190 Hb_001006_190 Hb_001545_080--Hb_001006_190 Hb_010080_090 Hb_010080_090 Hb_001688_020--Hb_010080_090 Hb_001688_020--Hb_000010_470 Hb_001688_020--Hb_155764_010 Hb_000317_410 Hb_000317_410 Hb_001688_020--Hb_000317_410 Hb_155764_010--Hb_116898_010 Hb_027073_040 Hb_027073_040 Hb_155764_010--Hb_027073_040 Hb_002301_230 Hb_002301_230 Hb_155764_010--Hb_002301_230 Hb_012114_040 Hb_012114_040 Hb_155764_010--Hb_012114_040 Hb_155764_010--Hb_000010_470 Hb_000696_310 Hb_000696_310 Hb_000260_810--Hb_000696_310 Hb_022181_020 Hb_022181_020 Hb_000260_810--Hb_022181_020 Hb_000260_810--Hb_048476_050 Hb_000260_810--Hb_005183_120 Hb_000260_810--Hb_002301_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.92239 3.07583 5.04042 4.64457 6.90566 8.61707
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.4384 16.8399 17.8225 19.7387 6.69359

CAGE analysis