Hb_181824_010

Information

Type -
Description -
Location Contig181824: 269-1277
Sequence    

Annotation

kegg
ID pop:POPTR_0013s02830g
description hypothetical protein
nr
ID XP_006375780.1
description hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
swissprot
ID P60838
description Probable disease resistance protein At1g12280 OS=Arabidopsis thaliana GN=At1g12280 PE=3 SV=1
trembl
ID U5FWB6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s02830g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_181824_010 0.0 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
2 Hb_005568_060 0.1001384605 - - PREDICTED: mitogen-activated protein kinase 3 [Jatropha curcas]
3 Hb_033149_020 0.1057443529 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
4 Hb_001846_040 0.1077187556 - - cytochrome P450, putative [Ricinus communis]
5 Hb_000045_140 0.1078336492 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
6 Hb_016404_010 0.1241506087 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
7 Hb_138628_010 0.128954387 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
8 Hb_007951_120 0.1337219219 - - PREDICTED: uncharacterized protein At1g15400 [Populus euphratica]
9 Hb_000532_030 0.1402624119 - - PREDICTED: oxalate--CoA ligase-like [Jatropha curcas]
10 Hb_010589_130 0.1402787384 - - PREDICTED: uncharacterized protein LOC104884346 [Beta vulgaris subsp. vulgaris]
11 Hb_000819_040 0.1404303452 - - ATP binding protein, putative [Ricinus communis]
12 Hb_004787_100 0.1418129552 - - PREDICTED: transcription factor bHLH47 [Jatropha curcas]
13 Hb_102100_010 0.1420143968 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
14 Hb_011287_020 0.1438868136 - - ATP binding protein, putative [Ricinus communis]
15 Hb_008380_010 0.1461487028 - - PREDICTED: PRA1 family protein B4-like [Camelina sativa]
16 Hb_185080_010 0.1487390661 - - -
17 Hb_000103_400 0.1512864309 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
18 Hb_000284_180 0.1523398697 - - hypothetical protein EUGRSUZ_B01865 [Eucalyptus grandis]
19 Hb_001989_060 0.153757269 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105634562 isoform X2 [Jatropha curcas]
20 Hb_007120_010 0.1540663006 - - PREDICTED: uncharacterized protein LOC105634737 [Jatropha curcas]

Gene co-expression network

sample Hb_181824_010 Hb_181824_010 Hb_005568_060 Hb_005568_060 Hb_181824_010--Hb_005568_060 Hb_033149_020 Hb_033149_020 Hb_181824_010--Hb_033149_020 Hb_001846_040 Hb_001846_040 Hb_181824_010--Hb_001846_040 Hb_000045_140 Hb_000045_140 Hb_181824_010--Hb_000045_140 Hb_016404_010 Hb_016404_010 Hb_181824_010--Hb_016404_010 Hb_138628_010 Hb_138628_010 Hb_181824_010--Hb_138628_010 Hb_005568_060--Hb_001846_040 Hb_004787_100 Hb_004787_100 Hb_005568_060--Hb_004787_100 Hb_005568_060--Hb_016404_010 Hb_009247_020 Hb_009247_020 Hb_005568_060--Hb_009247_020 Hb_006483_050 Hb_006483_050 Hb_005568_060--Hb_006483_050 Hb_000610_060 Hb_000610_060 Hb_033149_020--Hb_000610_060 Hb_000451_040 Hb_000451_040 Hb_033149_020--Hb_000451_040 Hb_008380_010 Hb_008380_010 Hb_033149_020--Hb_008380_010 Hb_033149_020--Hb_000045_140 Hb_056012_010 Hb_056012_010 Hb_033149_020--Hb_056012_010 Hb_011287_020 Hb_011287_020 Hb_001846_040--Hb_011287_020 Hb_019654_010 Hb_019654_010 Hb_001846_040--Hb_019654_010 Hb_001846_040--Hb_006483_050 Hb_035391_010 Hb_035391_010 Hb_001846_040--Hb_035391_010 Hb_000532_030 Hb_000532_030 Hb_000045_140--Hb_000532_030 Hb_000283_100 Hb_000283_100 Hb_000045_140--Hb_000283_100 Hb_010126_030 Hb_010126_030 Hb_000045_140--Hb_010126_030 Hb_001989_060 Hb_001989_060 Hb_000045_140--Hb_001989_060 Hb_007120_010 Hb_007120_010 Hb_000045_140--Hb_007120_010 Hb_136027_010 Hb_136027_010 Hb_016404_010--Hb_136027_010 Hb_000506_140 Hb_000506_140 Hb_016404_010--Hb_000506_140 Hb_000796_200 Hb_000796_200 Hb_016404_010--Hb_000796_200 Hb_002311_490 Hb_002311_490 Hb_016404_010--Hb_002311_490 Hb_000465_330 Hb_000465_330 Hb_016404_010--Hb_000465_330 Hb_012702_010 Hb_012702_010 Hb_138628_010--Hb_012702_010 Hb_019961_010 Hb_019961_010 Hb_138628_010--Hb_019961_010 Hb_002272_140 Hb_002272_140 Hb_138628_010--Hb_002272_140 Hb_000003_420 Hb_000003_420 Hb_138628_010--Hb_000003_420 Hb_138628_010--Hb_005568_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.799802 22.4979 7.05622 3.85881 0.455809 1.08882
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.238672 0.234612 0.342255 1.38226 0.475099

CAGE analysis