Hb_181975_010

Information

Type -
Description -
Location Contig181975: 1606-2190
Sequence    

Annotation

kegg
ID tcc:TCM_046052
description Phosphoprotein phosphatase
nr
ID XP_011023690.1
description PREDICTED: probable disease resistance protein At4g27220 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A067JVM2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23412 PE=4 SV=1
Gene Ontology
ID GO:0000166
description probable disease resistance protein at4g27220

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_181975_010 0.0 - - PREDICTED: probable disease resistance protein At4g27220 [Populus euphratica]
2 Hb_007257_050 0.1525755712 - - protein with unknown function [Ricinus communis]
3 Hb_001907_100 0.154254267 - - PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]
4 Hb_000003_390 0.1688233398 - - hypothetical protein POPTR_0003s20040g [Populus trichocarpa]
5 Hb_031089_030 0.1694356245 - - ubiquitin-conjugating enzyme E2 28 [Arabidopsis thaliana]
6 Hb_007978_020 0.1740486107 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA1-like [Jatropha curcas]
7 Hb_001493_010 0.174502693 - - triacylglycerol acidic lipase TAL4 [Ricinus communis]
8 Hb_002316_050 0.1803798389 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002326_070 0.1871385183 - - ent-kaurene oxidase, chloroplastic [Jatropha curcas]
10 Hb_003633_140 0.1884839187 - - PREDICTED: uncharacterized protein LOC105647486 isoform X1 [Jatropha curcas]
11 Hb_080147_080 0.1886428362 - - peroxiredoxin, putative [Ricinus communis]
12 Hb_001999_250 0.1896317083 - - PREDICTED: uncharacterized protein LOC105133073 isoform X1 [Populus euphratica]
13 Hb_000617_040 0.1898503272 - - PREDICTED: uncharacterized protein LOC105647487 isoform X2 [Jatropha curcas]
14 Hb_075449_020 0.1970177639 - - PREDICTED: uncharacterized protein LOC105633096 [Jatropha curcas]
15 Hb_000574_150 0.1983235135 - - PREDICTED: protein SRG1-like [Jatropha curcas]
16 Hb_128376_010 0.1997403795 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_000265_250 0.2013319143 - - auxilin, putative [Ricinus communis]
18 Hb_001396_170 0.2021135291 - - unnamed protein product [Vitis vinifera]
19 Hb_041237_010 0.2026515318 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002609_010 0.2032114676 - - PREDICTED: uncharacterized protein LOC105630866 [Jatropha curcas]

Gene co-expression network

sample Hb_181975_010 Hb_181975_010 Hb_007257_050 Hb_007257_050 Hb_181975_010--Hb_007257_050 Hb_001907_100 Hb_001907_100 Hb_181975_010--Hb_001907_100 Hb_000003_390 Hb_000003_390 Hb_181975_010--Hb_000003_390 Hb_031089_030 Hb_031089_030 Hb_181975_010--Hb_031089_030 Hb_007978_020 Hb_007978_020 Hb_181975_010--Hb_007978_020 Hb_001493_010 Hb_001493_010 Hb_181975_010--Hb_001493_010 Hb_007257_050--Hb_031089_030 Hb_010584_010 Hb_010584_010 Hb_007257_050--Hb_010584_010 Hb_009028_030 Hb_009028_030 Hb_007257_050--Hb_009028_030 Hb_000265_250 Hb_000265_250 Hb_007257_050--Hb_000265_250 Hb_003349_010 Hb_003349_010 Hb_007257_050--Hb_003349_010 Hb_003157_010 Hb_003157_010 Hb_007257_050--Hb_003157_010 Hb_002316_050 Hb_002316_050 Hb_001907_100--Hb_002316_050 Hb_003155_020 Hb_003155_020 Hb_001907_100--Hb_003155_020 Hb_010831_020 Hb_010831_020 Hb_001907_100--Hb_010831_020 Hb_000808_070 Hb_000808_070 Hb_001907_100--Hb_000808_070 Hb_001907_100--Hb_007257_050 Hb_000003_390--Hb_007257_050 Hb_000003_390--Hb_003157_010 Hb_000997_410 Hb_000997_410 Hb_000003_390--Hb_000997_410 Hb_000375_370 Hb_000375_370 Hb_000003_390--Hb_000375_370 Hb_000003_390--Hb_009028_030 Hb_006501_020 Hb_006501_020 Hb_000003_390--Hb_006501_020 Hb_003299_080 Hb_003299_080 Hb_031089_030--Hb_003299_080 Hb_084429_010 Hb_084429_010 Hb_031089_030--Hb_084429_010 Hb_001396_260 Hb_001396_260 Hb_031089_030--Hb_001396_260 Hb_031089_030--Hb_000375_370 Hb_001247_140 Hb_001247_140 Hb_031089_030--Hb_001247_140 Hb_041237_010 Hb_041237_010 Hb_007978_020--Hb_041237_010 Hb_000574_150 Hb_000574_150 Hb_007978_020--Hb_000574_150 Hb_000014_130 Hb_000014_130 Hb_007978_020--Hb_000014_130 Hb_000617_040 Hb_000617_040 Hb_007978_020--Hb_000617_040 Hb_003398_010 Hb_003398_010 Hb_007978_020--Hb_003398_010 Hb_001493_010--Hb_010831_020 Hb_000886_060 Hb_000886_060 Hb_001493_010--Hb_000886_060 Hb_001493_010--Hb_000003_390 Hb_170487_010 Hb_170487_010 Hb_001493_010--Hb_170487_010 Hb_001052_040 Hb_001052_040 Hb_001493_010--Hb_001052_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.7022 18.6406 1.52102 2.41201 6.14418 12.4752
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.78289 1.3187 0 2.16655 0.476518

CAGE analysis