Hb_182026_010

Information

Type -
Description -
Location Contig182026: 9636-10382
Sequence    

Annotation

kegg
ID cic:CICLE_v10003487mg
description hypothetical protein
nr
ID XP_006432532.1
description hypothetical protein CICLE_v10003487mg, partial [Citrus clementina]
swissprot
ID Q09825
description Spindle pole body-associated protein sad1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sad1 PE=1 SV=1
trembl
ID V4SY95
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10003487mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17720: 9428-21594
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_182026_010 0.0 - - hypothetical protein CICLE_v10003487mg, partial [Citrus clementina]
2 Hb_002997_100 0.0833585975 - - hypothetical protein JCGZ_19555 [Jatropha curcas]
3 Hb_000340_510 0.0838408964 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
4 Hb_022256_040 0.0840954367 - - PREDICTED: probable E3 ubiquitin-protein ligase rbrA isoform X2 [Jatropha curcas]
5 Hb_002631_050 0.0877823138 - - membrane associated ring finger 1,8, putative [Ricinus communis]
6 Hb_002818_040 0.0900745676 - - tRNA synthetase-related family protein [Populus trichocarpa]
7 Hb_006029_010 0.0905150935 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
8 Hb_004678_020 0.0907738358 - - PREDICTED: protein YIF1B [Jatropha curcas]
9 Hb_000175_490 0.0909132395 - - PREDICTED: probable polygalacturonase At1g80170 isoform X1 [Jatropha curcas]
10 Hb_005288_160 0.0931355067 - - PREDICTED: uncharacterized protein LOC105647746 isoform X1 [Jatropha curcas]
11 Hb_000733_060 0.0935802038 - - PREDICTED: protein GUCD1 isoform X1 [Jatropha curcas]
12 Hb_000768_030 0.0940050504 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
13 Hb_000161_030 0.096386481 transcription factor TF Family: TCP PREDICTED: transcription factor TCP8 [Jatropha curcas]
14 Hb_007786_010 0.0968162333 - - PREDICTED: uncharacterized protein LOC100801920 [Glycine max]
15 Hb_010222_030 0.0994618294 - - PREDICTED: uncharacterized protein LOC105647641 [Jatropha curcas]
16 Hb_000230_330 0.1001600891 - - PREDICTED: calcium-binding protein 39-like [Populus euphratica]
17 Hb_001427_170 0.1003947052 - - PREDICTED: 40S ribosomal protein S15a-5-like [Populus euphratica]
18 Hb_003609_040 0.1004127752 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
19 Hb_185467_020 0.100418892 - - Cucumisin precursor, putative [Ricinus communis]
20 Hb_003384_030 0.1015784442 - - PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Jatropha curcas]

Gene co-expression network

sample Hb_182026_010 Hb_182026_010 Hb_002997_100 Hb_002997_100 Hb_182026_010--Hb_002997_100 Hb_000340_510 Hb_000340_510 Hb_182026_010--Hb_000340_510 Hb_022256_040 Hb_022256_040 Hb_182026_010--Hb_022256_040 Hb_002631_050 Hb_002631_050 Hb_182026_010--Hb_002631_050 Hb_002818_040 Hb_002818_040 Hb_182026_010--Hb_002818_040 Hb_006029_010 Hb_006029_010 Hb_182026_010--Hb_006029_010 Hb_002997_100--Hb_022256_040 Hb_000078_130 Hb_000078_130 Hb_002997_100--Hb_000078_130 Hb_000230_330 Hb_000230_330 Hb_002997_100--Hb_000230_330 Hb_000733_060 Hb_000733_060 Hb_002997_100--Hb_000733_060 Hb_012654_010 Hb_012654_010 Hb_002997_100--Hb_012654_010 Hb_000340_510--Hb_002818_040 Hb_000481_010 Hb_000481_010 Hb_000340_510--Hb_000481_010 Hb_000001_180 Hb_000001_180 Hb_000340_510--Hb_000001_180 Hb_000107_100 Hb_000107_100 Hb_000340_510--Hb_000107_100 Hb_002026_110 Hb_002026_110 Hb_000340_510--Hb_002026_110 Hb_017168_010 Hb_017168_010 Hb_000340_510--Hb_017168_010 Hb_002874_070 Hb_002874_070 Hb_022256_040--Hb_002874_070 Hb_022256_040--Hb_002631_050 Hb_022256_040--Hb_000733_060 Hb_022256_040--Hb_000230_330 Hb_001584_110 Hb_001584_110 Hb_022256_040--Hb_001584_110 Hb_185467_020 Hb_185467_020 Hb_002631_050--Hb_185467_020 Hb_008453_150 Hb_008453_150 Hb_002631_050--Hb_008453_150 Hb_000017_120 Hb_000017_120 Hb_002631_050--Hb_000017_120 Hb_002631_050--Hb_000340_510 Hb_002631_050--Hb_000733_060 Hb_000462_150 Hb_000462_150 Hb_002818_040--Hb_000462_150 Hb_003384_030 Hb_003384_030 Hb_002818_040--Hb_003384_030 Hb_002818_040--Hb_000001_180 Hb_005314_010 Hb_005314_010 Hb_002818_040--Hb_005314_010 Hb_005914_230 Hb_005914_230 Hb_002818_040--Hb_005914_230 Hb_000161_030 Hb_000161_030 Hb_006029_010--Hb_000161_030 Hb_004156_060 Hb_004156_060 Hb_006029_010--Hb_004156_060 Hb_000491_080 Hb_000491_080 Hb_006029_010--Hb_000491_080 Hb_007786_010 Hb_007786_010 Hb_006029_010--Hb_007786_010 Hb_006029_010--Hb_000733_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
62.2435 17.6099 13.919 18.5379 87.8035 67.025
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.3783 35.9866 46.5732 10.8143 6.58114

CAGE analysis