Hb_182305_020

Information

Type -
Description -
Location Contig182305: 51442-53894
Sequence    

Annotation

kegg
ID pop:POPTR_0025s00600g
description ARP2/3 complex 21 kDa subunit family protein
nr
ID XP_012081164.1
description PREDICTED: actin-related protein 2/3 complex subunit 3 [Jatropha curcas]
swissprot
ID Q1ECJ7
description Actin-related protein 2/3 complex subunit 3 OS=Arabidopsis thaliana GN=ARPC3 PE=1 SV=1
trembl
ID A0A067K2A9
description Actin-related protein 2/3 complex subunit 3 OS=Jatropha curcas GN=JCGZ_17009 PE=3 SV=1
Gene Ontology
ID GO:0005737
description actin-related protein 2 3 complex subunit 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_182305_020 0.0 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Jatropha curcas]
2 Hb_003528_060 0.0769204506 - - PREDICTED: uncharacterized protein LOC105638256 isoform X2 [Jatropha curcas]
3 Hb_012573_070 0.0776134092 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000000_170 0.0807452604 - - defender against cell death, putative [Ricinus communis]
5 Hb_000545_150 0.0812389355 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
6 Hb_000510_110 0.0835772931 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
7 Hb_012022_120 0.0846969662 - - PREDICTED: protein N-methyltransferase NNT1 isoform X2 [Jatropha curcas]
8 Hb_032202_090 0.0850936648 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Jatropha curcas]
9 Hb_012753_230 0.0852310726 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
10 Hb_003927_140 0.0917294084 - - PREDICTED: nudix hydrolase 9 isoform X1 [Jatropha curcas]
11 Hb_002518_050 0.0929898442 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
12 Hb_000454_050 0.0938927183 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 [Vitis vinifera]
13 Hb_000123_230 0.0952054738 - - conserved hypothetical protein [Ricinus communis]
14 Hb_009851_100 0.096167199 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
15 Hb_002259_070 0.0963277068 - - taz protein, putative [Ricinus communis]
16 Hb_002864_050 0.0968417157 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
17 Hb_000699_160 0.0969771929 - - PREDICTED: C-Myc-binding protein homolog [Jatropha curcas]
18 Hb_000948_210 0.0970908577 - - PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial [Jatropha curcas]
19 Hb_002900_160 0.0976333349 - - PREDICTED: immediate early response 3-interacting protein 1-like [Jatropha curcas]
20 Hb_001538_120 0.0976727976 - - PREDICTED: FAD-linked sulfhydryl oxidase ERV1 [Jatropha curcas]

Gene co-expression network

sample Hb_182305_020 Hb_182305_020 Hb_003528_060 Hb_003528_060 Hb_182305_020--Hb_003528_060 Hb_012573_070 Hb_012573_070 Hb_182305_020--Hb_012573_070 Hb_000000_170 Hb_000000_170 Hb_182305_020--Hb_000000_170 Hb_000545_150 Hb_000545_150 Hb_182305_020--Hb_000545_150 Hb_000510_110 Hb_000510_110 Hb_182305_020--Hb_000510_110 Hb_012022_120 Hb_012022_120 Hb_182305_020--Hb_012022_120 Hb_003528_060--Hb_012573_070 Hb_001538_120 Hb_001538_120 Hb_003528_060--Hb_001538_120 Hb_003927_140 Hb_003927_140 Hb_003528_060--Hb_003927_140 Hb_013405_090 Hb_013405_090 Hb_003528_060--Hb_013405_090 Hb_001818_020 Hb_001818_020 Hb_003528_060--Hb_001818_020 Hb_012573_070--Hb_000545_150 Hb_002518_050 Hb_002518_050 Hb_012573_070--Hb_002518_050 Hb_000926_300 Hb_000926_300 Hb_012573_070--Hb_000926_300 Hb_001314_100 Hb_001314_100 Hb_012573_070--Hb_001314_100 Hb_003683_110 Hb_003683_110 Hb_012573_070--Hb_003683_110 Hb_000505_140 Hb_000505_140 Hb_000000_170--Hb_000505_140 Hb_128048_010 Hb_128048_010 Hb_000000_170--Hb_128048_010 Hb_000000_170--Hb_012022_120 Hb_001184_090 Hb_001184_090 Hb_000000_170--Hb_001184_090 Hb_000000_170--Hb_000926_300 Hb_002900_160 Hb_002900_160 Hb_000000_170--Hb_002900_160 Hb_000545_150--Hb_001818_020 Hb_000465_060 Hb_000465_060 Hb_000545_150--Hb_000465_060 Hb_000317_340 Hb_000317_340 Hb_000545_150--Hb_000317_340 Hb_032202_090 Hb_032202_090 Hb_000545_150--Hb_032202_090 Hb_001638_260 Hb_001638_260 Hb_000545_150--Hb_001638_260 Hb_000510_110--Hb_002518_050 Hb_000029_200 Hb_000029_200 Hb_000510_110--Hb_000029_200 Hb_004931_090 Hb_004931_090 Hb_000510_110--Hb_004931_090 Hb_001300_040 Hb_001300_040 Hb_000510_110--Hb_001300_040 Hb_000510_110--Hb_012573_070 Hb_000510_110--Hb_003683_110 Hb_012022_120--Hb_000505_140 Hb_002830_020 Hb_002830_020 Hb_012022_120--Hb_002830_020 Hb_012022_120--Hb_032202_090 Hb_000995_040 Hb_000995_040 Hb_012022_120--Hb_000995_040 Hb_005278_020 Hb_005278_020 Hb_012022_120--Hb_005278_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.73825 0.968016 5.83256 5.55826 8.96623 9.16634
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.9893 25.9066 7.29432 4.6978 3.91466

CAGE analysis