Hb_182424_010

Information

Type -
Description -
Location Contig182424: 12756-16074
Sequence    

Annotation

kegg
ID rcu:RCOM_0478370
description kinase, putative (EC:2.7.10.2)
nr
ID XP_012077558.1
description PREDICTED: U-box domain-containing protein 51 [Jatropha curcas]
swissprot
ID Q9SW11
description U-box domain-containing protein 35 OS=Arabidopsis thaliana GN=PUB35 PE=1 SV=2
trembl
ID B9T4K4
description Kinase, putative OS=Ricinus communis GN=RCOM_0478370 PE=4 SV=1
Gene Ontology
ID GO:0004715
description u-box domain-containing protein 52 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_182424_010 0.0 - - PREDICTED: U-box domain-containing protein 51 [Jatropha curcas]
2 Hb_127003_010 0.1263794529 - - PREDICTED: uncharacterized protein LOC105633613 [Jatropha curcas]
3 Hb_099864_010 0.1395756486 - - Disease resistance protein RPM1, putative [Ricinus communis]
4 Hb_011287_090 0.1563657566 - - PREDICTED: GDP-mannose transporter GONST3-like [Populus euphratica]
5 Hb_011218_060 0.1566303909 - - PREDICTED: dephospho-CoA kinase-like [Jatropha curcas]
6 Hb_170193_010 0.1620548891 - - JHL25H03.10 [Jatropha curcas]
7 Hb_000041_150 0.1686231962 - - Stachyose synthase precursor, putative [Ricinus communis]
8 Hb_000494_100 0.1698401181 - - H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]
9 Hb_000088_040 0.1727415701 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Jatropha curcas]
10 Hb_000291_280 0.1772994025 - - PREDICTED: LOW QUALITY PROTEIN: myosin-11 [Jatropha curcas]
11 Hb_000120_050 0.1811836148 - - PREDICTED: protein ELF4-LIKE 1 [Jatropha curcas]
12 Hb_030736_010 0.1828213148 - - conserved hypothetical protein [Ricinus communis]
13 Hb_153258_010 0.1846600181 - - PREDICTED: uncharacterized protein LOC105642325 [Jatropha curcas]
14 Hb_098993_010 0.1850016009 - - PREDICTED: chaperone protein dnaJ 72 isoform X2 [Jatropha curcas]
15 Hb_002326_050 0.1874200456 - - PREDICTED: uncharacterized protein LOC105633701 [Jatropha curcas]
16 Hb_000139_380 0.1919084916 - - conserved hypothetical protein [Ricinus communis]
17 Hb_011639_050 0.1931714343 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000997_210 0.1935914958 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
19 Hb_000049_070 0.194341473 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA11 isoform X2 [Jatropha curcas]
20 Hb_005227_070 0.1965749494 - - serine/threonine protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_182424_010 Hb_182424_010 Hb_127003_010 Hb_127003_010 Hb_182424_010--Hb_127003_010 Hb_099864_010 Hb_099864_010 Hb_182424_010--Hb_099864_010 Hb_011287_090 Hb_011287_090 Hb_182424_010--Hb_011287_090 Hb_011218_060 Hb_011218_060 Hb_182424_010--Hb_011218_060 Hb_170193_010 Hb_170193_010 Hb_182424_010--Hb_170193_010 Hb_000041_150 Hb_000041_150 Hb_182424_010--Hb_000041_150 Hb_127003_010--Hb_000041_150 Hb_127003_010--Hb_170193_010 Hb_153258_010 Hb_153258_010 Hb_127003_010--Hb_153258_010 Hb_000139_380 Hb_000139_380 Hb_127003_010--Hb_000139_380 Hb_098993_010 Hb_098993_010 Hb_127003_010--Hb_098993_010 Hb_038011_010 Hb_038011_010 Hb_099864_010--Hb_038011_010 Hb_000431_020 Hb_000431_020 Hb_099864_010--Hb_000431_020 Hb_099864_010--Hb_011218_060 Hb_099864_010--Hb_127003_010 Hb_099864_010--Hb_011287_090 Hb_000049_070 Hb_000049_070 Hb_011287_090--Hb_000049_070 Hb_002874_070 Hb_002874_070 Hb_011287_090--Hb_002874_070 Hb_000077_130 Hb_000077_130 Hb_011287_090--Hb_000077_130 Hb_011287_090--Hb_000139_380 Hb_000236_250 Hb_000236_250 Hb_011287_090--Hb_000236_250 Hb_006935_050 Hb_006935_050 Hb_011287_090--Hb_006935_050 Hb_002391_230 Hb_002391_230 Hb_011218_060--Hb_002391_230 Hb_000291_280 Hb_000291_280 Hb_011218_060--Hb_000291_280 Hb_005227_070 Hb_005227_070 Hb_011218_060--Hb_005227_070 Hb_000622_310 Hb_000622_310 Hb_011218_060--Hb_000622_310 Hb_011909_040 Hb_011909_040 Hb_011218_060--Hb_011909_040 Hb_170193_010--Hb_000139_380 Hb_005211_160 Hb_005211_160 Hb_170193_010--Hb_005211_160 Hb_085863_020 Hb_085863_020 Hb_170193_010--Hb_085863_020 Hb_002326_050 Hb_002326_050 Hb_170193_010--Hb_002326_050 Hb_170193_010--Hb_011287_090 Hb_000041_150--Hb_153258_010 Hb_000997_210 Hb_000997_210 Hb_000041_150--Hb_000997_210 Hb_000187_090 Hb_000187_090 Hb_000041_150--Hb_000187_090 Hb_001221_170 Hb_001221_170 Hb_000041_150--Hb_001221_170 Hb_000120_050 Hb_000120_050 Hb_000041_150--Hb_000120_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.218241 0.0316267 0.0691298 0.0849868 0.292008 0.24661
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0621863 0.0815523 0.433876 0.0713293 0

CAGE analysis