Hb_182424_020

Information

Type -
Description -
Location Contig182424: 18864-19334
Sequence    

Annotation

kegg
ID pop:POPTR_0006s24190g
description hypothetical protein
nr
ID XP_006382006.1
description hypothetical protein POPTR_0006s24190g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5G8D2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s24190g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_182424_020 0.0 - - hypothetical protein POPTR_0006s24190g [Populus trichocarpa]
2 Hb_000975_170 0.1207083835 - - PREDICTED: UDP-glucuronic acid decarboxylase 6 isoform X1 [Jatropha curcas]
3 Hb_181463_020 0.1540269659 - - hypothetical protein JCGZ_26765 [Jatropha curcas]
4 Hb_000230_170 0.1645566321 - - PREDICTED: histidine-containing phosphotransfer protein 1 [Jatropha curcas]
5 Hb_046117_030 0.1714415656 - - sialyltransferase, putative [Ricinus communis]
6 Hb_031330_020 0.1799369109 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
7 Hb_082550_010 0.1801219946 - - hypothetical protein CISIN_1g0081081mg, partial [Citrus sinensis]
8 Hb_159308_020 0.1802081381 - - hypothetical protein B456_002G027900 [Gossypium raimondii]
9 Hb_000265_030 0.182372032 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
10 Hb_000300_680 0.186418998 - - PREDICTED: uncharacterized protein LOC105632625 isoform X1 [Jatropha curcas]
11 Hb_002400_300 0.1874116159 - - PREDICTED: synaptotagmin-4 [Jatropha curcas]
12 Hb_102761_010 0.1891215279 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
13 Hb_000414_180 0.1899168903 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X2 [Vitis vinifera]
14 Hb_000035_020 0.1901725735 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
15 Hb_151870_010 0.19094127 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
16 Hb_001248_140 0.1911288815 - - Thylakoid lumenal 19 kDa protein, chloroplast precursor, putative [Ricinus communis]
17 Hb_000309_070 0.1920859964 - - PREDICTED: 2-methylene-furan-3-one reductase [Cucumis melo]
18 Hb_000054_130 0.1937078143 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
19 Hb_005288_060 0.1971199572 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like isoform X1 [Citrus sinensis]
20 Hb_004724_260 0.1986099297 - - PREDICTED: 40S ribosomal protein S14-2-like [Gossypium raimondii]

Gene co-expression network

sample Hb_182424_020 Hb_182424_020 Hb_000975_170 Hb_000975_170 Hb_182424_020--Hb_000975_170 Hb_181463_020 Hb_181463_020 Hb_182424_020--Hb_181463_020 Hb_000230_170 Hb_000230_170 Hb_182424_020--Hb_000230_170 Hb_046117_030 Hb_046117_030 Hb_182424_020--Hb_046117_030 Hb_031330_020 Hb_031330_020 Hb_182424_020--Hb_031330_020 Hb_082550_010 Hb_082550_010 Hb_182424_020--Hb_082550_010 Hb_002400_300 Hb_002400_300 Hb_000975_170--Hb_002400_300 Hb_000309_070 Hb_000309_070 Hb_000975_170--Hb_000309_070 Hb_114917_010 Hb_114917_010 Hb_000975_170--Hb_114917_010 Hb_001221_240 Hb_001221_240 Hb_000975_170--Hb_001221_240 Hb_000975_170--Hb_031330_020 Hb_000237_120 Hb_000237_120 Hb_181463_020--Hb_000237_120 Hb_000054_130 Hb_000054_130 Hb_181463_020--Hb_000054_130 Hb_001109_170 Hb_001109_170 Hb_181463_020--Hb_001109_170 Hb_001622_020 Hb_001622_020 Hb_181463_020--Hb_001622_020 Hb_032143_010 Hb_032143_010 Hb_181463_020--Hb_032143_010 Hb_167211_010 Hb_167211_010 Hb_181463_020--Hb_167211_010 Hb_001054_060 Hb_001054_060 Hb_000230_170--Hb_001054_060 Hb_000054_030 Hb_000054_030 Hb_000230_170--Hb_000054_030 Hb_178968_080 Hb_178968_080 Hb_000230_170--Hb_178968_080 Hb_012132_020 Hb_012132_020 Hb_000230_170--Hb_012132_020 Hb_006775_110 Hb_006775_110 Hb_000230_170--Hb_006775_110 Hb_000033_010 Hb_000033_010 Hb_046117_030--Hb_000033_010 Hb_000130_480 Hb_000130_480 Hb_046117_030--Hb_000130_480 Hb_002983_090 Hb_002983_090 Hb_046117_030--Hb_002983_090 Hb_000237_160 Hb_000237_160 Hb_046117_030--Hb_000237_160 Hb_094437_020 Hb_094437_020 Hb_046117_030--Hb_094437_020 Hb_000594_130 Hb_000594_130 Hb_046117_030--Hb_000594_130 Hb_000300_680 Hb_000300_680 Hb_031330_020--Hb_000300_680 Hb_001916_150 Hb_001916_150 Hb_031330_020--Hb_001916_150 Hb_003778_020 Hb_003778_020 Hb_031330_020--Hb_003778_020 Hb_000975_050 Hb_000975_050 Hb_031330_020--Hb_000975_050 Hb_134813_010 Hb_134813_010 Hb_031330_020--Hb_134813_010 Hb_011053_020 Hb_011053_020 Hb_031330_020--Hb_011053_020 Hb_000836_030 Hb_000836_030 Hb_082550_010--Hb_000836_030 Hb_006198_040 Hb_006198_040 Hb_082550_010--Hb_006198_040 Hb_082550_010--Hb_000130_480 Hb_000665_210 Hb_000665_210 Hb_082550_010--Hb_000665_210 Hb_124579_020 Hb_124579_020 Hb_082550_010--Hb_124579_020 Hb_000076_060 Hb_000076_060 Hb_082550_010--Hb_000076_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0812086 0.458319 1.4772 5.14534 0.0637419 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.29665 0.582568 0.194841 3.55749 11.383

CAGE analysis