Hb_182651_020

Information

Type -
Description -
Location Contig182651: 3342-4191
Sequence    

Annotation

kegg
ID rcu:RCOM_0223350
description alcohol dehydrogenase, putative (EC:1.3.1.74)
nr
ID XP_002524486.1
description alcohol dehydrogenase, putative [Ricinus communis]
swissprot
ID Q39172
description NADP-dependent alkenal double bond reductase P1 OS=Arabidopsis thaliana GN=P1 PE=1 SV=1
trembl
ID B9SER7
description Alcohol dehydrogenase, putative OS=Ricinus communis GN=RCOM_0223350 PE=4 SV=1
Gene Ontology
ID GO:0008270
description 2-alkenal reductase (nadp(+)-dependent)-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_182651_020 0.0 - - alcohol dehydrogenase, putative [Ricinus communis]
2 Hb_006483_120 0.1368121497 - - DNA binding protein, putative [Ricinus communis]
3 Hb_062013_010 0.1461192762 - - phosphoprotein phosphatase, putative [Ricinus communis]
4 Hb_000366_030 0.1492114893 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Jatropha curcas]
5 Hb_001080_150 0.1531085885 - - PREDICTED: Niemann-Pick C1 protein-like [Jatropha curcas]
6 Hb_000329_080 0.1543200298 - - PREDICTED: transketolase, chloroplastic [Jatropha curcas]
7 Hb_001195_370 0.1572603759 - - -
8 Hb_046117_030 0.1603522934 - - sialyltransferase, putative [Ricinus communis]
9 Hb_000963_090 0.1616454568 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Hevea brasiliensis]
10 Hb_000917_210 0.1618310553 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000594_130 0.1629917529 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_002110_090 0.166070107 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
13 Hb_004712_200 0.1696058485 - - hypothetical protein CICLE_v10010292mg [Citrus clementina]
14 Hb_001468_040 0.1719260554 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
15 Hb_000997_320 0.1738111784 - - PREDICTED: acylamino-acid-releasing enzyme-like [Malus domestica]
16 Hb_001793_030 0.1760519366 - - Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma cacao]
17 Hb_000300_680 0.1762223637 - - PREDICTED: uncharacterized protein LOC105632625 isoform X1 [Jatropha curcas]
18 Hb_010620_030 0.1791409216 - - beta-amyrin synthase [Euphorbia tirucalli]
19 Hb_000092_060 0.180535428 - - PREDICTED: uncharacterized protein LOC105646505 [Jatropha curcas]
20 Hb_000574_330 0.1818865765 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]

Gene co-expression network

sample Hb_182651_020 Hb_182651_020 Hb_006483_120 Hb_006483_120 Hb_182651_020--Hb_006483_120 Hb_062013_010 Hb_062013_010 Hb_182651_020--Hb_062013_010 Hb_000366_030 Hb_000366_030 Hb_182651_020--Hb_000366_030 Hb_001080_150 Hb_001080_150 Hb_182651_020--Hb_001080_150 Hb_000329_080 Hb_000329_080 Hb_182651_020--Hb_000329_080 Hb_001195_370 Hb_001195_370 Hb_182651_020--Hb_001195_370 Hb_010620_030 Hb_010620_030 Hb_006483_120--Hb_010620_030 Hb_000439_020 Hb_000439_020 Hb_006483_120--Hb_000439_020 Hb_042463_010 Hb_042463_010 Hb_006483_120--Hb_042463_010 Hb_000574_330 Hb_000574_330 Hb_006483_120--Hb_000574_330 Hb_007793_030 Hb_007793_030 Hb_006483_120--Hb_007793_030 Hb_062013_010--Hb_000329_080 Hb_062013_010--Hb_001080_150 Hb_000414_180 Hb_000414_180 Hb_062013_010--Hb_000414_180 Hb_000963_090 Hb_000963_090 Hb_062013_010--Hb_000963_090 Hb_001365_010 Hb_001365_010 Hb_062013_010--Hb_001365_010 Hb_000366_030--Hb_001195_370 Hb_000757_020 Hb_000757_020 Hb_000366_030--Hb_000757_020 Hb_001969_130 Hb_001969_130 Hb_000366_030--Hb_001969_130 Hb_049293_010 Hb_049293_010 Hb_000366_030--Hb_049293_010 Hb_000731_290 Hb_000731_290 Hb_000366_030--Hb_000731_290 Hb_011174_080 Hb_011174_080 Hb_000366_030--Hb_011174_080 Hb_001080_150--Hb_001195_370 Hb_001080_150--Hb_000329_080 Hb_007933_030 Hb_007933_030 Hb_001080_150--Hb_007933_030 Hb_001080_150--Hb_000963_090 Hb_078477_060 Hb_078477_060 Hb_001080_150--Hb_078477_060 Hb_000329_080--Hb_001365_010 Hb_000163_110 Hb_000163_110 Hb_000329_080--Hb_000163_110 Hb_000329_080--Hb_001195_370 Hb_000300_680 Hb_000300_680 Hb_000329_080--Hb_000300_680 Hb_001811_080 Hb_001811_080 Hb_000329_080--Hb_001811_080 Hb_000977_150 Hb_000977_150 Hb_000329_080--Hb_000977_150 Hb_030312_030 Hb_030312_030 Hb_001195_370--Hb_030312_030 Hb_000997_290 Hb_000997_290 Hb_001195_370--Hb_000997_290 Hb_000997_320 Hb_000997_320 Hb_001195_370--Hb_000997_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.36992 7.75065 10.8367 17.4587 0.61982 4.82533
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.973014 1.22283 0 15.8124 52.6055

CAGE analysis