Hb_182831_020

Information

Type -
Description -
Location Contig182831: 6806-11189
Sequence    

Annotation

kegg
ID rcu:RCOM_0024820
description multidrug resistance pump, putative
nr
ID XP_002527924.1
description multidrug resistance pump, putative [Ricinus communis]
swissprot
ID Q9LYT3
description Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1
trembl
ID B9SPK5
description MATE efflux family protein OS=Ricinus communis GN=RCOM_0024820 PE=3 SV=1
Gene Ontology
ID GO:0016021
description protein transparent testa 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17840: 6875-10969
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_182831_020 0.0 - - multidrug resistance pump, putative [Ricinus communis]
2 Hb_161346_010 0.063023301 - - PREDICTED: germin-like protein subfamily 1 member 20 [Populus euphratica]
3 Hb_011139_010 0.0911871036 - - o-methyltransferase, putative [Ricinus communis]
4 Hb_003789_020 0.1096020578 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
5 Hb_003171_070 0.1102903753 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Citrus sinensis]
6 Hb_131029_010 0.1182590523 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
7 Hb_000676_380 0.1205342837 - - cytochrome P450 family protein [Populus trichocarpa]
8 Hb_001775_130 0.1424409241 - - Prephenate dehydratase [Hevea brasiliensis]
9 Hb_030394_050 0.1446206917 - - lipid binding protein, putative [Ricinus communis]
10 Hb_000046_250 0.1457355852 - - conserved hypothetical protein [Ricinus communis]
11 Hb_081282_010 0.147228207 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
12 Hb_008727_030 0.1535523093 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003090_230 0.1549468999 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000098_210 0.1556490734 - - PREDICTED: uncharacterized protein LOC105633345 [Jatropha curcas]
15 Hb_002876_190 0.1582049971 transcription factor TF Family: GRAS hypothetical protein PRUPE_ppa017519mg [Prunus persica]
16 Hb_170861_010 0.1584853097 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
17 Hb_003177_100 0.160369242 - - PREDICTED: auxin-induced protein 6B [Jatropha curcas]
18 Hb_039096_010 0.1618864431 - - unknown [Populus trichocarpa]
19 Hb_002413_030 0.1621438675 - - sulfate transporter, putative [Ricinus communis]
20 Hb_004875_040 0.165222489 - - PREDICTED: uncharacterized protein LOC105645797 [Jatropha curcas]

Gene co-expression network

sample Hb_182831_020 Hb_182831_020 Hb_161346_010 Hb_161346_010 Hb_182831_020--Hb_161346_010 Hb_011139_010 Hb_011139_010 Hb_182831_020--Hb_011139_010 Hb_003789_020 Hb_003789_020 Hb_182831_020--Hb_003789_020 Hb_003171_070 Hb_003171_070 Hb_182831_020--Hb_003171_070 Hb_131029_010 Hb_131029_010 Hb_182831_020--Hb_131029_010 Hb_000676_380 Hb_000676_380 Hb_182831_020--Hb_000676_380 Hb_161346_010--Hb_003171_070 Hb_161346_010--Hb_131029_010 Hb_161346_010--Hb_000676_380 Hb_002413_030 Hb_002413_030 Hb_161346_010--Hb_002413_030 Hb_161346_010--Hb_003789_020 Hb_011139_010--Hb_003789_020 Hb_008727_030 Hb_008727_030 Hb_011139_010--Hb_008727_030 Hb_030394_050 Hb_030394_050 Hb_011139_010--Hb_030394_050 Hb_011139_010--Hb_000676_380 Hb_011139_010--Hb_161346_010 Hb_003789_020--Hb_008727_030 Hb_003789_020--Hb_030394_050 Hb_001360_060 Hb_001360_060 Hb_003789_020--Hb_001360_060 Hb_005144_180 Hb_005144_180 Hb_003789_020--Hb_005144_180 Hb_003171_070--Hb_000676_380 Hb_006314_020 Hb_006314_020 Hb_003171_070--Hb_006314_020 Hb_001856_150 Hb_001856_150 Hb_003171_070--Hb_001856_150 Hb_003371_040 Hb_003371_040 Hb_003171_070--Hb_003371_040 Hb_000429_030 Hb_000429_030 Hb_003171_070--Hb_000429_030 Hb_000670_080 Hb_000670_080 Hb_131029_010--Hb_000670_080 Hb_082864_010 Hb_082864_010 Hb_131029_010--Hb_082864_010 Hb_000166_010 Hb_000166_010 Hb_131029_010--Hb_000166_010 Hb_001544_010 Hb_001544_010 Hb_131029_010--Hb_001544_010 Hb_003090_230 Hb_003090_230 Hb_000676_380--Hb_003090_230 Hb_020805_110 Hb_020805_110 Hb_000676_380--Hb_020805_110 Hb_000676_380--Hb_001856_150 Hb_004875_040 Hb_004875_040 Hb_000676_380--Hb_004875_040 Hb_009711_040 Hb_009711_040 Hb_000676_380--Hb_009711_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0900454 0.124381 3.12565 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.71563 0.123225

CAGE analysis