Hb_182970_010

Information

Type -
Description -
Location Contig182970: 1240-1677
Sequence    

Annotation

kegg
ID pop:POPTR_0006s20210g
description POPTRDRAFT_762879; calmodulin-binding protein 60-D
nr
ID XP_002309326.2
description calmodulin-binding protein 60-D [Populus trichocarpa]
swissprot
ID F4IPM3
description Calmodulin-binding protein 60 E OS=Arabidopsis thaliana GN=CBP60E PE=2 SV=1
trembl
ID B9HAQ9
description Calmodulin-binding protein 60-D OS=Populus trichocarpa GN=POPTR_0006s20210g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_182970_010 0.0 - - calmodulin-binding protein 60-D [Populus trichocarpa]
2 Hb_003633_150 0.1086614064 - - hypothetical protein JCGZ_23296 [Jatropha curcas]
3 Hb_002400_040 0.1149391463 - - PREDICTED: uncharacterized protein LOC105637633 [Jatropha curcas]
4 Hb_001329_080 0.1263101945 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
5 Hb_001226_170 0.1315670701 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
6 Hb_003209_090 0.1328326312 - - Xyloglucan endotransglucosylase/hydrolase family protein [Theobroma cacao]
7 Hb_005408_080 0.1393663203 - - PREDICTED: U-box domain-containing protein 16 [Jatropha curcas]
8 Hb_012272_010 0.1408458096 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
9 Hb_000210_160 0.1412623945 - - PREDICTED: protein YLS9-like [Jatropha curcas]
10 Hb_001472_140 0.142267478 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
11 Hb_001189_150 0.1471315596 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 89-like [Jatropha curcas]
12 Hb_009476_110 0.1502826313 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
13 Hb_000521_100 0.15212895 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001247_160 0.1549562996 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
15 Hb_000047_010 0.1555692895 - - PREDICTED: expansin-like A1 [Jatropha curcas]
16 Hb_008406_030 0.1563811762 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]
17 Hb_004116_150 0.1572123938 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000892_030 0.1581063395 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
19 Hb_001102_200 0.1585986096 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Jatropha curcas]
20 Hb_004109_110 0.1593486298 - - dioxygenase family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_182970_010 Hb_182970_010 Hb_003633_150 Hb_003633_150 Hb_182970_010--Hb_003633_150 Hb_002400_040 Hb_002400_040 Hb_182970_010--Hb_002400_040 Hb_001329_080 Hb_001329_080 Hb_182970_010--Hb_001329_080 Hb_001226_170 Hb_001226_170 Hb_182970_010--Hb_001226_170 Hb_003209_090 Hb_003209_090 Hb_182970_010--Hb_003209_090 Hb_005408_080 Hb_005408_080 Hb_182970_010--Hb_005408_080 Hb_009476_110 Hb_009476_110 Hb_003633_150--Hb_009476_110 Hb_001247_160 Hb_001247_160 Hb_003633_150--Hb_001247_160 Hb_005282_010 Hb_005282_010 Hb_003633_150--Hb_005282_010 Hb_000567_110 Hb_000567_110 Hb_003633_150--Hb_000567_110 Hb_001405_060 Hb_001405_060 Hb_003633_150--Hb_001405_060 Hb_002400_040--Hb_005408_080 Hb_000047_010 Hb_000047_010 Hb_002400_040--Hb_000047_010 Hb_000892_030 Hb_000892_030 Hb_002400_040--Hb_000892_030 Hb_094437_050 Hb_094437_050 Hb_002400_040--Hb_094437_050 Hb_004109_110 Hb_004109_110 Hb_002400_040--Hb_004109_110 Hb_001472_140 Hb_001472_140 Hb_001329_080--Hb_001472_140 Hb_000009_200 Hb_000009_200 Hb_001329_080--Hb_000009_200 Hb_005714_100 Hb_005714_100 Hb_001329_080--Hb_005714_100 Hb_007382_100 Hb_007382_100 Hb_001329_080--Hb_007382_100 Hb_056196_060 Hb_056196_060 Hb_001329_080--Hb_056196_060 Hb_000087_100 Hb_000087_100 Hb_001226_170--Hb_000087_100 Hb_001226_170--Hb_003633_150 Hb_001226_170--Hb_009476_110 Hb_001102_200 Hb_001102_200 Hb_001226_170--Hb_001102_200 Hb_001226_170--Hb_007382_100 Hb_000371_120 Hb_000371_120 Hb_003209_090--Hb_000371_120 Hb_097634_010 Hb_097634_010 Hb_003209_090--Hb_097634_010 Hb_003209_090--Hb_002400_040 Hb_004241_200 Hb_004241_200 Hb_003209_090--Hb_004241_200 Hb_000077_160 Hb_000077_160 Hb_003209_090--Hb_000077_160 Hb_005408_080--Hb_000892_030 Hb_005408_080--Hb_094437_050 Hb_000110_260 Hb_000110_260 Hb_005408_080--Hb_000110_260 Hb_005725_280 Hb_005725_280 Hb_005408_080--Hb_005725_280 Hb_005408_080--Hb_001329_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.214239 6.64265 4.29234 6.22085 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.336814 0.529109 0.434572 0.83748 1.43491

CAGE analysis