Hb_183086_050

Information

Type -
Description -
Location Contig183086: 33906-38446
Sequence    

Annotation

kegg
ID pop:POPTR_0012s03180g
description POPTRDRAFT_422445, POPTRDRAFT_569651; hypothetical protein
nr
ID XP_012080790.1
description PREDICTED: metal-nicotianamine transporter YSL3 [Jatropha curcas]
swissprot
ID Q2EF88
description Metal-nicotianamine transporter YSL3 OS=Arabidopsis thaliana GN=YSL3 PE=2 SV=1
trembl
ID A0A067K6P2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16395 PE=4 SV=1
Gene Ontology
ID GO:0055085
description metal-nicotianamine transporter ysl3-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17871: 34112-38279
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_183086_050 0.0 - - PREDICTED: metal-nicotianamine transporter YSL3 [Jatropha curcas]
2 Hb_000300_660 0.1627697912 - - unknown [Glycine max]
3 Hb_006154_020 0.1642492283 transcription factor TF Family: C2H2 hypothetical protein RCOM_1621120 [Ricinus communis]
4 Hb_003687_250 0.169165548 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 1-like [Jatropha curcas]
5 Hb_015934_120 0.1695088931 - - PREDICTED: callose synthase 7 [Vitis vinifera]
6 Hb_000613_070 0.171172375 - - -
7 Hb_000186_050 0.1720323956 - - PREDICTED: uncharacterized protein LOC105649281 [Jatropha curcas]
8 Hb_113818_010 0.1751049805 - - Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis]
9 Hb_001999_210 0.1755573593 - - PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic [Eucalyptus grandis]
10 Hb_140459_010 0.1756547407 - - thioredoxin f-type, putative [Ricinus communis]
11 Hb_008053_050 0.1757351895 - - PREDICTED: uncharacterized protein LOC105642980 isoform X2 [Jatropha curcas]
12 Hb_003884_040 0.1760238421 - - putative gag-pol polyprotein [Oryza sativa Japonica Group]
13 Hb_008699_030 0.1785541454 - - hypothetical protein CISIN_1g017963mg [Citrus sinensis]
14 Hb_001195_450 0.1795429677 - - PREDICTED: uncharacterized protein LOC105633771 [Jatropha curcas]
15 Hb_003211_030 0.181529063 - - -
16 Hb_000656_310 0.1816004137 - - PREDICTED: cation/calcium exchanger 4-like [Jatropha curcas]
17 Hb_000114_150 0.1824911818 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl-diphosphate synthase [Hevea brasiliensis]
18 Hb_003544_010 0.1836566641 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Jatropha curcas]
19 Hb_010883_190 0.1851575837 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000665_130 0.1861754492 - - PREDICTED: uncharacterized protein LOC105637599 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_183086_050 Hb_183086_050 Hb_000300_660 Hb_000300_660 Hb_183086_050--Hb_000300_660 Hb_006154_020 Hb_006154_020 Hb_183086_050--Hb_006154_020 Hb_003687_250 Hb_003687_250 Hb_183086_050--Hb_003687_250 Hb_015934_120 Hb_015934_120 Hb_183086_050--Hb_015934_120 Hb_000613_070 Hb_000613_070 Hb_183086_050--Hb_000613_070 Hb_000186_050 Hb_000186_050 Hb_183086_050--Hb_000186_050 Hb_000028_110 Hb_000028_110 Hb_000300_660--Hb_000028_110 Hb_009767_130 Hb_009767_130 Hb_000300_660--Hb_009767_130 Hb_000371_100 Hb_000371_100 Hb_000300_660--Hb_000371_100 Hb_000300_660--Hb_015934_120 Hb_000327_110 Hb_000327_110 Hb_000300_660--Hb_000327_110 Hb_003994_110 Hb_003994_110 Hb_000300_660--Hb_003994_110 Hb_001124_100 Hb_001124_100 Hb_006154_020--Hb_001124_100 Hb_008699_030 Hb_008699_030 Hb_006154_020--Hb_008699_030 Hb_113818_010 Hb_113818_010 Hb_006154_020--Hb_113818_010 Hb_006154_020--Hb_003687_250 Hb_008053_050 Hb_008053_050 Hb_006154_020--Hb_008053_050 Hb_015978_110 Hb_015978_110 Hb_003687_250--Hb_015978_110 Hb_001369_700 Hb_001369_700 Hb_003687_250--Hb_001369_700 Hb_000172_380 Hb_000172_380 Hb_003687_250--Hb_000172_380 Hb_003687_250--Hb_113818_010 Hb_006683_070 Hb_006683_070 Hb_015934_120--Hb_006683_070 Hb_001314_080 Hb_001314_080 Hb_015934_120--Hb_001314_080 Hb_185255_010 Hb_185255_010 Hb_015934_120--Hb_185255_010 Hb_005144_050 Hb_005144_050 Hb_015934_120--Hb_005144_050 Hb_005800_030 Hb_005800_030 Hb_015934_120--Hb_005800_030 Hb_000172_440 Hb_000172_440 Hb_015934_120--Hb_000172_440 Hb_001999_210 Hb_001999_210 Hb_000613_070--Hb_001999_210 Hb_000309_050 Hb_000309_050 Hb_000613_070--Hb_000309_050 Hb_002611_010 Hb_002611_010 Hb_000613_070--Hb_002611_010 Hb_001080_300 Hb_001080_300 Hb_000613_070--Hb_001080_300 Hb_000803_320 Hb_000803_320 Hb_000613_070--Hb_000803_320 Hb_003106_190 Hb_003106_190 Hb_000613_070--Hb_003106_190 Hb_000665_130 Hb_000665_130 Hb_000186_050--Hb_000665_130 Hb_000186_050--Hb_001999_210 Hb_001951_220 Hb_001951_220 Hb_000186_050--Hb_001951_220 Hb_000504_180 Hb_000504_180 Hb_000186_050--Hb_000504_180 Hb_002768_060 Hb_002768_060 Hb_000186_050--Hb_002768_060 Hb_000465_280 Hb_000465_280 Hb_000186_050--Hb_000465_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.15934 5.55485 2.528 13.8252 1.29159 4.25899
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.0355 7.2886 7.31452 5.27116 27.5893

CAGE analysis