Hb_183191_020

Information

Type -
Description -
Location Contig183191: 63372-66079
Sequence    

Annotation

kegg
ID rcu:RCOM_2017950
description hypothetical protein
nr
ID XP_002535071.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9TA02
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_2017950 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17879: 65707-66377
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_183191_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_042463_020 0.2174128793 - - conserved hypothetical protein [Ricinus communis]
3 Hb_062192_030 0.2183421388 - - ribosomal protein S1 (mitochondrion) [Hevea brasiliensis]
4 Hb_156746_010 0.2183532654 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
5 Hb_034168_070 0.2204704761 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
6 Hb_072212_020 0.2229683715 - - hypothetical protein B456_001G162300 [Gossypium raimondii]
7 Hb_004987_030 0.22467681 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
8 Hb_006040_160 0.2270037862 - - ribosomal protein S12 (mitochondrion) [Hevea brasiliensis]
9 Hb_000268_100 0.2275857654 - - -
10 Hb_013420_040 0.2298907847 - - unnamed protein product [Vitis vinifera]
11 Hb_027357_010 0.2319837735 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_001158_010 0.2376850143 - - hypothetical protein, partial [Pseudomonas fluorescens]
13 Hb_041813_030 0.2378677281 - - cytochrome oxidase subunit 1, partial (mitochondrion) [Calochone redingii]
14 Hb_171685_060 0.2397863429 - - PREDICTED: cytochrome c oxidase subunit 2 [Pyrus x bretschneideri]
15 Hb_042463_070 0.2438756966 - - 60S ribosomal protein L16, putative [Ricinus communis]
16 Hb_001450_010 0.2444429104 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
17 Hb_008305_010 0.2447625312 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_000159_020 0.2451928094 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Jatropha curcas]
19 Hb_013420_010 0.2453881404 - - conserved hypothetical protein [Ricinus communis]
20 Hb_102602_030 0.2461718184 - - hypothetical protein (mitochondrion) [Vicia faba]

Gene co-expression network

sample Hb_183191_020 Hb_183191_020 Hb_042463_020 Hb_042463_020 Hb_183191_020--Hb_042463_020 Hb_062192_030 Hb_062192_030 Hb_183191_020--Hb_062192_030 Hb_156746_010 Hb_156746_010 Hb_183191_020--Hb_156746_010 Hb_034168_070 Hb_034168_070 Hb_183191_020--Hb_034168_070 Hb_072212_020 Hb_072212_020 Hb_183191_020--Hb_072212_020 Hb_004987_030 Hb_004987_030 Hb_183191_020--Hb_004987_030 Hb_042463_020--Hb_034168_070 Hb_042463_020--Hb_156746_010 Hb_012163_050 Hb_012163_050 Hb_042463_020--Hb_012163_050 Hb_104735_020 Hb_104735_020 Hb_042463_020--Hb_104735_020 Hb_062273_010 Hb_062273_010 Hb_042463_020--Hb_062273_010 Hb_042463_070 Hb_042463_070 Hb_042463_020--Hb_042463_070 Hb_189099_020 Hb_189099_020 Hb_062192_030--Hb_189099_020 Hb_041813_030 Hb_041813_030 Hb_062192_030--Hb_041813_030 Hb_062192_030--Hb_042463_070 Hb_001338_080 Hb_001338_080 Hb_062192_030--Hb_001338_080 Hb_006040_160 Hb_006040_160 Hb_062192_030--Hb_006040_160 Hb_062192_030--Hb_034168_070 Hb_006040_030 Hb_006040_030 Hb_156746_010--Hb_006040_030 Hb_156746_010--Hb_042463_070 Hb_156746_010--Hb_041813_030 Hb_013420_050 Hb_013420_050 Hb_156746_010--Hb_013420_050 Hb_156746_010--Hb_012163_050 Hb_013420_020 Hb_013420_020 Hb_156746_010--Hb_013420_020 Hb_034168_070--Hb_156746_010 Hb_004643_010 Hb_004643_010 Hb_034168_070--Hb_004643_010 Hb_034168_070--Hb_041813_030 Hb_034168_070--Hb_042463_070 Hb_034168_070--Hb_012163_050 Hb_072212_020--Hb_062273_010 Hb_072212_020--Hb_062192_030 Hb_072212_020--Hb_042463_020 Hb_088080_030 Hb_088080_030 Hb_072212_020--Hb_088080_030 Hb_072212_020--Hb_189099_020 Hb_072212_020--Hb_034168_070 Hb_000012_440 Hb_000012_440 Hb_004987_030--Hb_000012_440 Hb_000699_080 Hb_000699_080 Hb_004987_030--Hb_000699_080 Hb_006925_030 Hb_006925_030 Hb_004987_030--Hb_006925_030 Hb_004987_030--Hb_088080_030 Hb_000120_900 Hb_000120_900 Hb_004987_030--Hb_000120_900 Hb_159305_010 Hb_159305_010 Hb_004987_030--Hb_159305_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.030436 0.0447234 0.0192915 0 0 0.104193
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0557443 0 0.0802676 0.0353285 1.24839

CAGE analysis