Hb_183443_010

Information

Type -
Description -
Location Contig183443: 3-986
Sequence    

Annotation

kegg
ID tcc:TCM_027657
description Gag protease polyprotein
nr
ID XP_012468708.1
description PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NAW6
description Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial-like protein OS=Gossypium arboreum GN=F383_13104 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_183443_010 0.0 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
2 Hb_089206_010 0.1547862864 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
3 Hb_146339_010 0.169145293 - - hypothetical protein JCGZ_01613 [Jatropha curcas]
4 Hb_063943_010 0.1821384495 - - PREDICTED: box C/D snoRNA protein 1 [Jatropha curcas]
5 Hb_000566_030 0.1882728388 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
6 Hb_000334_180 0.1886192007 - - hypothetical protein JCGZ_16779 [Jatropha curcas]
7 Hb_174473_010 0.1899813127 - - PREDICTED: uncharacterized protein LOC105775505 [Gossypium raimondii]
8 Hb_002851_080 0.1916945683 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
9 Hb_003688_160 0.200639632 - - Presenilin-like family protein [Populus trichocarpa]
10 Hb_010427_010 0.2068581296 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_06191 [Jatropha curcas]
11 Hb_000193_140 0.2068971616 - - conserved hypothetical protein [Ricinus communis]
12 Hb_011639_040 0.2073039655 - - hypothetical protein M569_08265, partial [Genlisea aurea]
13 Hb_004103_030 0.2134396077 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007590_070 0.218967013 - - PREDICTED: inositol 3-kinase [Jatropha curcas]
15 Hb_000284_100 0.2223248499 - - PREDICTED: transcription factor GTE11 isoform X2 [Populus euphratica]
16 Hb_001221_140 0.2234282714 - - DNA binding protein, putative [Ricinus communis]
17 Hb_000732_170 0.2237067019 - - PREDICTED: putative PAP-specific phosphatase, mitochondrial isoform X1 [Jatropha curcas]
18 Hb_001006_340 0.2244511346 - - PREDICTED: sodium/hydrogen exchanger 7-like [Malus domestica]
19 Hb_002035_080 0.2254668128 - - unnamed protein product [Vitis vinifera]
20 Hb_000159_100 0.2274136933 - - PREDICTED: uncharacterized protein At4g19900 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_183443_010 Hb_183443_010 Hb_089206_010 Hb_089206_010 Hb_183443_010--Hb_089206_010 Hb_146339_010 Hb_146339_010 Hb_183443_010--Hb_146339_010 Hb_063943_010 Hb_063943_010 Hb_183443_010--Hb_063943_010 Hb_000566_030 Hb_000566_030 Hb_183443_010--Hb_000566_030 Hb_000334_180 Hb_000334_180 Hb_183443_010--Hb_000334_180 Hb_174473_010 Hb_174473_010 Hb_183443_010--Hb_174473_010 Hb_089206_010--Hb_063943_010 Hb_000357_120 Hb_000357_120 Hb_089206_010--Hb_000357_120 Hb_003688_160 Hb_003688_160 Hb_089206_010--Hb_003688_160 Hb_052689_010 Hb_052689_010 Hb_089206_010--Hb_052689_010 Hb_004097_120 Hb_004097_120 Hb_089206_010--Hb_004097_120 Hb_146339_010--Hb_063943_010 Hb_003059_010 Hb_003059_010 Hb_146339_010--Hb_003059_010 Hb_146339_010--Hb_089206_010 Hb_003175_110 Hb_003175_110 Hb_146339_010--Hb_003175_110 Hb_000714_040 Hb_000714_040 Hb_146339_010--Hb_000714_040 Hb_063943_010--Hb_003059_010 Hb_063943_010--Hb_003175_110 Hb_003124_030 Hb_003124_030 Hb_063943_010--Hb_003124_030 Hb_001781_020 Hb_001781_020 Hb_000566_030--Hb_001781_020 Hb_001021_070 Hb_001021_070 Hb_000566_030--Hb_001021_070 Hb_001221_140 Hb_001221_140 Hb_000566_030--Hb_001221_140 Hb_000566_030--Hb_000334_180 Hb_000366_200 Hb_000366_200 Hb_000566_030--Hb_000366_200 Hb_004411_030 Hb_004411_030 Hb_000566_030--Hb_004411_030 Hb_008778_010 Hb_008778_010 Hb_000334_180--Hb_008778_010 Hb_007380_040 Hb_007380_040 Hb_000334_180--Hb_007380_040 Hb_002035_080 Hb_002035_080 Hb_000334_180--Hb_002035_080 Hb_001636_020 Hb_001636_020 Hb_000334_180--Hb_001636_020 Hb_010427_010 Hb_010427_010 Hb_174473_010--Hb_010427_010 Hb_003781_010 Hb_003781_010 Hb_174473_010--Hb_003781_010 Hb_000159_100 Hb_000159_100 Hb_174473_010--Hb_000159_100 Hb_004224_020 Hb_004224_020 Hb_174473_010--Hb_004224_020 Hb_174473_010--Hb_003688_160 Hb_002099_080 Hb_002099_080 Hb_174473_010--Hb_002099_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.4107 0.847491 0.516019 1.03979 1.27166 1.67552
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 2.0936 2.71581 1.66192

CAGE analysis