Hb_183510_010

Information

Type -
Description -
Location Contig183510: 6544-8897
Sequence    

Annotation

kegg
ID pop:POPTR_0011s09650g
description POPTRDRAFT_728031; hypothetical protein
nr
ID XP_012071058.1
description PREDICTED: RPM1-interacting protein 4-like isoform X2 [Jatropha curcas]
swissprot
ID Q8GYN5
description RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1 SV=1
trembl
ID B9I1B3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s09650g PE=4 SV=2
Gene Ontology
ID GO:0005622
description rpm1-interacting protein 4-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17932: 6605-8885
cDNA
(Sanger)
(ID:Location)		 002_J09.ab1: 6606-8836 , 002_K12.ab1: 6605-8885 , 004_D09.ab1: 6605-8836 , 005_I13.ab1: 6605-8836 , 007_A13.ab1: 6605-8720 , 008_G15.ab1: 6662-8695 , 008_L08.ab1: 6605-8722 , 010_F06.ab1: 6605-8836 , 015_O15.ab1: 6605-8720 , 026_P11.ab1: 6605-8722 , 032_E04.ab1: 6605-8836 , 033_O14.ab1: 6605-8722 , 039_A03.ab1: 6607-8836 , 039_A04.ab1: 6606-8836 , 040_D24.ab1: 6605-8836 , 043_C05.ab1: 6588-8836 , 045_F21.ab1: 6605-8722 , 045_O20.ab1: 6605-8885 , 050_J01.ab1: 6610-8830 , 051_F07.ab1: 6605-8722

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_183510_010 0.0 - - PREDICTED: RPM1-interacting protein 4-like isoform X2 [Jatropha curcas]
2 Hb_000174_200 0.0907510983 - - PREDICTED: pre-mRNA-splicing factor 38 [Jatropha curcas]
3 Hb_000076_290 0.0909354045 - - translation factor sui1, putative [Ricinus communis]
4 Hb_001178_060 0.0978702149 - - PREDICTED: protein BUD31 homolog 2 isoform X1 [Jatropha curcas]
5 Hb_000322_170 0.0994582255 - - PREDICTED: nucleosome assembly protein 1;3 [Jatropha curcas]
6 Hb_002002_020 0.1052093007 - - Phosphoprotein phosphatase isoform 3 [Theobroma cacao]
7 Hb_005038_020 0.1059850896 - - WD-repeat protein, putative [Ricinus communis]
8 Hb_006588_090 0.1093667787 - - PREDICTED: uncharacterized protein At4g28440 [Jatropha curcas]
9 Hb_000640_210 0.1105834673 - - hypothetical protein JCGZ_14045 [Jatropha curcas]
10 Hb_009355_030 0.1110578122 - - conserved hypothetical protein [Ricinus communis]
11 Hb_015401_020 0.1137118512 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
12 Hb_005333_020 0.1144327803 - - PREDICTED: protein CutA, chloroplastic [Jatropha curcas]
13 Hb_001633_100 0.1181150986 - - PREDICTED: protein NETWORKED 3A-like [Jatropha curcas]
14 Hb_000465_310 0.1196945586 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005144_040 0.1207796988 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
16 Hb_153150_010 0.1230742321 - - PREDICTED: serine/threonine-protein phosphatase PP2A-3 catalytic subunit [Eucalyptus grandis]
17 Hb_002078_420 0.1238059285 - - PREDICTED: F-box only protein 6 [Jatropha curcas]
18 Hb_005016_030 0.124154571 - - hypothetical protein JCGZ_16549 [Jatropha curcas]
19 Hb_000029_160 0.1250785941 - - Nitrilase, putative [Ricinus communis]
20 Hb_000016_280 0.1267767861 - - Arginine/serine-rich splicing factor 35 [Theobroma cacao]

Gene co-expression network

sample Hb_183510_010 Hb_183510_010 Hb_000174_200 Hb_000174_200 Hb_183510_010--Hb_000174_200 Hb_000076_290 Hb_000076_290 Hb_183510_010--Hb_000076_290 Hb_001178_060 Hb_001178_060 Hb_183510_010--Hb_001178_060 Hb_000322_170 Hb_000322_170 Hb_183510_010--Hb_000322_170 Hb_002002_020 Hb_002002_020 Hb_183510_010--Hb_002002_020 Hb_005038_020 Hb_005038_020 Hb_183510_010--Hb_005038_020 Hb_000174_200--Hb_000076_290 Hb_000640_210 Hb_000640_210 Hb_000174_200--Hb_000640_210 Hb_004032_350 Hb_004032_350 Hb_000174_200--Hb_004032_350 Hb_015401_020 Hb_015401_020 Hb_000174_200--Hb_015401_020 Hb_000174_200--Hb_000322_170 Hb_005144_040 Hb_005144_040 Hb_000174_200--Hb_005144_040 Hb_000076_290--Hb_004032_350 Hb_000076_290--Hb_000640_210 Hb_001439_180 Hb_001439_180 Hb_000076_290--Hb_001439_180 Hb_000076_290--Hb_015401_020 Hb_002270_010 Hb_002270_010 Hb_000076_290--Hb_002270_010 Hb_005016_030 Hb_005016_030 Hb_001178_060--Hb_005016_030 Hb_001178_060--Hb_000322_170 Hb_001178_060--Hb_000640_210 Hb_060437_010 Hb_060437_010 Hb_001178_060--Hb_060437_010 Hb_001178_060--Hb_000076_290 Hb_002149_040 Hb_002149_040 Hb_001178_060--Hb_002149_040 Hb_000322_170--Hb_000640_210 Hb_000322_170--Hb_005016_030 Hb_000322_170--Hb_004032_350 Hb_000322_170--Hb_000076_290 Hb_002002_020--Hb_000322_170 Hb_002002_020--Hb_015401_020 Hb_002843_100 Hb_002843_100 Hb_002002_020--Hb_002843_100 Hb_002002_020--Hb_001178_060 Hb_002002_020--Hb_000174_200 Hb_005399_020 Hb_005399_020 Hb_005038_020--Hb_005399_020 Hb_012395_160 Hb_012395_160 Hb_005038_020--Hb_012395_160 Hb_002849_080 Hb_002849_080 Hb_005038_020--Hb_002849_080 Hb_148209_020 Hb_148209_020 Hb_005038_020--Hb_148209_020 Hb_002078_420 Hb_002078_420 Hb_005038_020--Hb_002078_420 Hb_005038_020--Hb_000174_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3276.72 2050.8 156.202 241.014 2450.24 2235.13
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
942.685 838.939 755.811 433.022 37.787

CAGE analysis