Hb_183612_090

Information

Type -
Description -
Location Contig183612: 33611-36504
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17951: 32944-33285
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_183612_090 0.0 - - -
2 Hb_001085_180 0.1566083743 - - conserved hypothetical protein [Ricinus communis]
3 Hb_012305_020 0.1733221445 - - beta-1,3-glucanase [Hevea brasiliensis]
4 Hb_003060_040 0.1757639489 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL15 [Jatropha curcas]
5 Hb_061383_010 0.1767573761 - - beta-1,3-glucanase [Hevea brasiliensis]
6 Hb_003913_050 0.1793621061 - - 60S ribosomal protein L27B [Hevea brasiliensis]
7 Hb_091433_030 0.181020282 - - -
8 Hb_004159_050 0.18419903 - - conserved hypothetical protein [Ricinus communis]
9 Hb_032202_250 0.1873811016 - - PREDICTED: F-box protein PP2-A13 [Jatropha curcas]
10 Hb_000920_320 0.1892605 transcription factor TF Family: Orphans hypothetical protein JCGZ_24525 [Jatropha curcas]
11 Hb_002989_040 0.1898319129 - - hypothetical protein 1 [Hevea brasiliensis]
12 Hb_004968_070 0.2040345702 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001396_090 0.2073375222 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Jatropha curcas]
14 Hb_010589_050 0.2074024218 - - -
15 Hb_148422_010 0.2077840948 - - PREDICTED: uncharacterized protein LOC104908874, partial [Beta vulgaris subsp. vulgaris]
16 Hb_183612_080 0.2152319445 - - hypothetical protein POPTR_0001s00500g [Populus trichocarpa]
17 Hb_003226_240 0.2182313628 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
18 Hb_001425_060 0.2223888906 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001842_080 0.2242917796 - - -
20 Hb_000258_180 0.2246218981 - - PREDICTED: glutathione S-transferase U10-like [Vitis vinifera]

Gene co-expression network

sample Hb_183612_090 Hb_183612_090 Hb_001085_180 Hb_001085_180 Hb_183612_090--Hb_001085_180 Hb_012305_020 Hb_012305_020 Hb_183612_090--Hb_012305_020 Hb_003060_040 Hb_003060_040 Hb_183612_090--Hb_003060_040 Hb_061383_010 Hb_061383_010 Hb_183612_090--Hb_061383_010 Hb_003913_050 Hb_003913_050 Hb_183612_090--Hb_003913_050 Hb_091433_030 Hb_091433_030 Hb_183612_090--Hb_091433_030 Hb_001085_180--Hb_012305_020 Hb_004968_070 Hb_004968_070 Hb_001085_180--Hb_004968_070 Hb_000284_190 Hb_000284_190 Hb_001085_180--Hb_000284_190 Hb_001085_180--Hb_061383_010 Hb_032202_250 Hb_032202_250 Hb_001085_180--Hb_032202_250 Hb_012305_020--Hb_061383_010 Hb_086692_020 Hb_086692_020 Hb_012305_020--Hb_086692_020 Hb_001266_030 Hb_001266_030 Hb_012305_020--Hb_001266_030 Hb_000062_300 Hb_000062_300 Hb_012305_020--Hb_000062_300 Hb_000920_320 Hb_000920_320 Hb_003060_040--Hb_000920_320 Hb_003060_040--Hb_091433_030 Hb_000270_620 Hb_000270_620 Hb_003060_040--Hb_000270_620 Hb_001433_100 Hb_001433_100 Hb_003060_040--Hb_001433_100 Hb_003226_240 Hb_003226_240 Hb_003060_040--Hb_003226_240 Hb_003060_040--Hb_003913_050 Hb_061383_010--Hb_086692_020 Hb_002150_050 Hb_002150_050 Hb_061383_010--Hb_002150_050 Hb_001396_090 Hb_001396_090 Hb_061383_010--Hb_001396_090 Hb_038134_010 Hb_038134_010 Hb_061383_010--Hb_038134_010 Hb_003913_050--Hb_000920_320 Hb_003913_050--Hb_001396_090 Hb_000103_550 Hb_000103_550 Hb_003913_050--Hb_000103_550 Hb_003913_050--Hb_003226_240 Hb_004159_050 Hb_004159_050 Hb_003913_050--Hb_004159_050 Hb_003913_050--Hb_000270_620 Hb_001425_060 Hb_001425_060 Hb_091433_030--Hb_001425_060 Hb_001425_070 Hb_001425_070 Hb_091433_030--Hb_001425_070 Hb_002989_040 Hb_002989_040 Hb_091433_030--Hb_002989_040 Hb_023051_020 Hb_023051_020 Hb_091433_030--Hb_023051_020 Hb_000103_030 Hb_000103_030 Hb_091433_030--Hb_000103_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.135769 0.498644
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.58754 7.74302 1.46921 0.456717 0

CAGE analysis