Hb_183961_010

Information

Type -
Description -
Location Contig183961: 501-1476
Sequence    

Annotation

kegg
ID csv:101226004
description inactive rhomboid protein 1-like
nr
ID XP_004153913.1
description PREDICTED: inactive rhomboid protein 1 [Cucumis sativus]
swissprot
ID -
description -
trembl
ID A0A0A0LXE7
description Uncharacterized protein OS=Cucumis sativus GN=Csa_1G523040 PE=4 SV=1
Gene Ontology
ID GO:0005794
description inactive rhomboid protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_183961_010 0.0 - - PREDICTED: inactive rhomboid protein 1 [Cucumis sativus]
2 Hb_001008_090 0.0858656198 - - cytochrome C oxidase, putative [Ricinus communis]
3 Hb_000300_220 0.0938407243 - - PREDICTED: uncharacterized protein LOC105632569 [Jatropha curcas]
4 Hb_005278_040 0.1180098625 - - PREDICTED: sorcin-like isoform X1 [Populus euphratica]
5 Hb_011457_090 0.1180103152 - - PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Jatropha curcas]
6 Hb_011537_110 0.1217137345 - - hypothetical protein PRUPE_ppa013160mg [Prunus persica]
7 Hb_004659_060 0.121898846 - - RAS-related GTP-binding family protein [Populus trichocarpa]
8 Hb_000322_140 0.1258585315 - - hypothetical protein RCOM_1047200 [Ricinus communis]
9 Hb_000417_260 0.1320136151 - - protein with unknown function [Ricinus communis]
10 Hb_005527_040 0.1325957695 - - PREDICTED: methionine adenosyltransferase 2 subunit beta [Jatropha curcas]
11 Hb_000260_210 0.1365960197 - - conserved hypothetical protein [Ricinus communis]
12 Hb_027751_060 0.139099311 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Jatropha curcas]
13 Hb_001519_030 0.1393289062 - - PREDICTED: protein trichome birefringence-like 12 isoform X1 [Jatropha curcas]
14 Hb_000224_120 0.1422285599 - - eukaryotic translation initiation factor 1Aa [Hevea brasiliensis]
15 Hb_020419_020 0.1433069611 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
16 Hb_006538_140 0.1438023366 - - PREDICTED: uncharacterized protein LOC103341483 [Prunus mume]
17 Hb_006569_100 0.1452652515 - - hypothetical protein POPTR_0005s26990g [Populus trichocarpa]
18 Hb_001481_140 0.1455755169 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
19 Hb_000292_060 0.1467230606 - - transporter, putative [Ricinus communis]
20 Hb_000805_250 0.1486052812 - - PREDICTED: rhomboid-like protease 2 [Jatropha curcas]

Gene co-expression network

sample Hb_183961_010 Hb_183961_010 Hb_001008_090 Hb_001008_090 Hb_183961_010--Hb_001008_090 Hb_000300_220 Hb_000300_220 Hb_183961_010--Hb_000300_220 Hb_005278_040 Hb_005278_040 Hb_183961_010--Hb_005278_040 Hb_011457_090 Hb_011457_090 Hb_183961_010--Hb_011457_090 Hb_011537_110 Hb_011537_110 Hb_183961_010--Hb_011537_110 Hb_004659_060 Hb_004659_060 Hb_183961_010--Hb_004659_060 Hb_001008_090--Hb_005278_040 Hb_000417_260 Hb_000417_260 Hb_001008_090--Hb_000417_260 Hb_001008_090--Hb_004659_060 Hb_006569_100 Hb_006569_100 Hb_001008_090--Hb_006569_100 Hb_001008_090--Hb_000300_220 Hb_000322_140 Hb_000322_140 Hb_000300_220--Hb_000322_140 Hb_000300_220--Hb_011537_110 Hb_068056_030 Hb_068056_030 Hb_000300_220--Hb_068056_030 Hb_000300_220--Hb_011457_090 Hb_005278_040--Hb_000417_260 Hb_002324_010 Hb_002324_010 Hb_005278_040--Hb_002324_010 Hb_000384_120 Hb_000384_120 Hb_005278_040--Hb_000384_120 Hb_000056_250 Hb_000056_250 Hb_005278_040--Hb_000056_250 Hb_138585_040 Hb_138585_040 Hb_005278_040--Hb_138585_040 Hb_011457_090--Hb_011537_110 Hb_000224_120 Hb_000224_120 Hb_011457_090--Hb_000224_120 Hb_001153_060 Hb_001153_060 Hb_011457_090--Hb_001153_060 Hb_000635_150 Hb_000635_150 Hb_011457_090--Hb_000635_150 Hb_004336_050 Hb_004336_050 Hb_011457_090--Hb_004336_050 Hb_027625_010 Hb_027625_010 Hb_011537_110--Hb_027625_010 Hb_001235_030 Hb_001235_030 Hb_011537_110--Hb_001235_030 Hb_011537_110--Hb_000224_120 Hb_000046_290 Hb_000046_290 Hb_011537_110--Hb_000046_290 Hb_004659_060--Hb_000417_260 Hb_000122_020 Hb_000122_020 Hb_004659_060--Hb_000122_020 Hb_114310_080 Hb_114310_080 Hb_004659_060--Hb_114310_080 Hb_004449_200 Hb_004449_200 Hb_004659_060--Hb_004449_200 Hb_012490_050 Hb_012490_050 Hb_004659_060--Hb_012490_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.18844 0.0773422 0.712052 3.12139 0.276826 1.92129
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.16091 4.49377 5.56822 1.95879 1.22526

CAGE analysis