Hb_183963_020

Information

Type -
Description -
Location Contig183963: 18788-25923
Sequence    

Annotation

kegg
ID rcu:RCOM_1416890
description ATP binding protein, putative
nr
ID XP_012085417.1
description PREDICTED: uncharacterized protein LOC105644615 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LA16
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15156 PE=4 SV=1
Gene Ontology
ID GO:0005525
description atp binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17965: 18802-25930 , PASA_asmbl_17966: 26551-28768
cDNA
(Sanger)
(ID:Location)		 011_J01.ab1: 23704-25911

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_183963_020 0.0 - - PREDICTED: uncharacterized protein LOC105644615 [Jatropha curcas]
2 Hb_025087_010 0.0581526738 - - PREDICTED: RING-H2 finger protein ATL56 [Jatropha curcas]
3 Hb_000085_300 0.0646492594 - - -
4 Hb_001722_040 0.0738113041 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
5 Hb_001366_230 0.0739995644 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007021_020 0.0758170811 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
7 Hb_002387_060 0.0842110327 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002326_030 0.0877752369 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein REM16-like isoform X1 [Jatropha curcas]
9 Hb_005000_290 0.0887849458 transcription factor TF Family: HSF hypothetical protein JCGZ_07430 [Jatropha curcas]
10 Hb_009026_050 0.0914940977 - - vacuolar ATPase F subunit [Hevea brasiliensis]
11 Hb_000563_590 0.0915317055 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
12 Hb_001191_100 0.0919046058 - - F-actin capping protein beta subunit [Populus trichocarpa]
13 Hb_012522_030 0.0930151566 - - ankyrin repeat-containing protein, putative [Ricinus communis]
14 Hb_000051_040 0.0936367524 - - PREDICTED: uncharacterized protein LOC102597788 [Solanum tuberosum]
15 Hb_002282_020 0.0948871902 - - PREDICTED: uncharacterized protein LOC105629828 [Jatropha curcas]
16 Hb_008695_190 0.0956223208 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]
17 Hb_000111_280 0.0962654396 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
18 Hb_002291_030 0.0984560989 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
19 Hb_000032_220 0.0985282606 - - PREDICTED: abscisic acid receptor PYL8-like isoform X1 [Jatropha curcas]
20 Hb_001427_120 0.0996819965 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]

Gene co-expression network

sample Hb_183963_020 Hb_183963_020 Hb_025087_010 Hb_025087_010 Hb_183963_020--Hb_025087_010 Hb_000085_300 Hb_000085_300 Hb_183963_020--Hb_000085_300 Hb_001722_040 Hb_001722_040 Hb_183963_020--Hb_001722_040 Hb_001366_230 Hb_001366_230 Hb_183963_020--Hb_001366_230 Hb_007021_020 Hb_007021_020 Hb_183963_020--Hb_007021_020 Hb_002387_060 Hb_002387_060 Hb_183963_020--Hb_002387_060 Hb_025087_010--Hb_001366_230 Hb_008695_190 Hb_008695_190 Hb_025087_010--Hb_008695_190 Hb_009026_050 Hb_009026_050 Hb_025087_010--Hb_009026_050 Hb_025087_010--Hb_001722_040 Hb_005000_290 Hb_005000_290 Hb_025087_010--Hb_005000_290 Hb_000085_300--Hb_002387_060 Hb_000085_300--Hb_025087_010 Hb_000032_220 Hb_000032_220 Hb_000085_300--Hb_000032_220 Hb_000085_300--Hb_007021_020 Hb_000085_300--Hb_001722_040 Hb_001999_120 Hb_001999_120 Hb_001722_040--Hb_001999_120 Hb_001722_040--Hb_001366_230 Hb_002447_030 Hb_002447_030 Hb_001722_040--Hb_002447_030 Hb_003038_180 Hb_003038_180 Hb_001722_040--Hb_003038_180 Hb_001191_100 Hb_001191_100 Hb_001366_230--Hb_001191_100 Hb_000313_380 Hb_000313_380 Hb_001366_230--Hb_000313_380 Hb_001804_040 Hb_001804_040 Hb_001366_230--Hb_001804_040 Hb_026988_020 Hb_026988_020 Hb_001366_230--Hb_026988_020 Hb_000362_210 Hb_000362_210 Hb_007021_020--Hb_000362_210 Hb_002660_160 Hb_002660_160 Hb_007021_020--Hb_002660_160 Hb_000051_040 Hb_000051_040 Hb_007021_020--Hb_000051_040 Hb_000212_260 Hb_000212_260 Hb_007021_020--Hb_000212_260 Hb_001427_120 Hb_001427_120 Hb_007021_020--Hb_001427_120 Hb_012522_030 Hb_012522_030 Hb_002387_060--Hb_012522_030 Hb_015934_020 Hb_015934_020 Hb_002387_060--Hb_015934_020 Hb_002387_060--Hb_000032_220 Hb_002291_030 Hb_002291_030 Hb_002387_060--Hb_002291_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
65.563 5.91836 4.9436 5.98157 47.6246 59.8513
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
102.927 104.213 77.4298 15.7706 4.78255

CAGE analysis