Hb_183963_030

Information

Type -
Description -
Location Contig183963: 26716-34106
Sequence    

Annotation

kegg
ID rcu:RCOM_1416870
description DNA binding protein, putative
nr
ID XP_002531081.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SYL2
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1416870 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17966: 26551-28768 , PASA_asmbl_17967: 32439-34009 , PASA_asmbl_17968: 28780-33920 , PASA_asmbl_17969: 31971-32425 , PASA_asmbl_17970: 29521-29726
cDNA
(Sanger)
(ID:Location)		 018_C07.ab1: 33291-33920

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_183963_030 0.0 - - DNA binding protein, putative [Ricinus communis]
2 Hb_002188_110 0.042142318 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
3 Hb_000025_360 0.0644854223 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
4 Hb_000959_040 0.0697989995 - - PREDICTED: uncharacterized protein LOC105636570 [Jatropha curcas]
5 Hb_010578_060 0.0709000008 - - PREDICTED: mediator of RNA polymerase II transcription subunit 14 [Jatropha curcas]
6 Hb_004128_050 0.0721363486 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
7 Hb_001247_070 0.0725555904 - - PREDICTED: pentatricopeptide repeat-containing protein At1g56690, mitochondrial [Jatropha curcas]
8 Hb_007676_100 0.0726974719 - - PREDICTED: uncharacterized protein LOC105646857 [Jatropha curcas]
9 Hb_000174_220 0.0736343741 - - cohesin subunit rad21, putative [Ricinus communis]
10 Hb_000107_500 0.0756003911 - - PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Jatropha curcas]
11 Hb_006649_060 0.0757987891 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001967_030 0.0762788663 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
13 Hb_000796_030 0.0767386084 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
14 Hb_004718_010 0.0778796838 - - PREDICTED: uncharacterized protein LOC105638290 [Jatropha curcas]
15 Hb_009851_070 0.0785596229 - - PREDICTED: cyclin-dependent kinase E-1 [Jatropha curcas]
16 Hb_003785_040 0.0808211305 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
17 Hb_000101_240 0.0808533337 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
18 Hb_006847_040 0.0811992959 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 1 [Jatropha curcas]
19 Hb_006252_020 0.0823803005 - - PREDICTED: SET and MYND domain-containing protein 4 isoform X2 [Jatropha curcas]
20 Hb_000046_010 0.0829134155 - - PREDICTED: histidine-containing phosphotransfer protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_183963_030 Hb_183963_030 Hb_002188_110 Hb_002188_110 Hb_183963_030--Hb_002188_110 Hb_000025_360 Hb_000025_360 Hb_183963_030--Hb_000025_360 Hb_000959_040 Hb_000959_040 Hb_183963_030--Hb_000959_040 Hb_010578_060 Hb_010578_060 Hb_183963_030--Hb_010578_060 Hb_004128_050 Hb_004128_050 Hb_183963_030--Hb_004128_050 Hb_001247_070 Hb_001247_070 Hb_183963_030--Hb_001247_070 Hb_002188_110--Hb_000025_360 Hb_002188_110--Hb_000959_040 Hb_007676_100 Hb_007676_100 Hb_002188_110--Hb_007676_100 Hb_000441_070 Hb_000441_070 Hb_002188_110--Hb_000441_070 Hb_002188_110--Hb_001247_070 Hb_045793_010 Hb_045793_010 Hb_000025_360--Hb_045793_010 Hb_000046_010 Hb_000046_010 Hb_000025_360--Hb_000046_010 Hb_001718_090 Hb_001718_090 Hb_000025_360--Hb_001718_090 Hb_000107_500 Hb_000107_500 Hb_000025_360--Hb_000107_500 Hb_000959_040--Hb_007676_100 Hb_004718_010 Hb_004718_010 Hb_000959_040--Hb_004718_010 Hb_000959_040--Hb_010578_060 Hb_018133_050 Hb_018133_050 Hb_000959_040--Hb_018133_050 Hb_010578_060--Hb_004718_010 Hb_010578_060--Hb_002188_110 Hb_010578_060--Hb_001247_070 Hb_004543_030 Hb_004543_030 Hb_010578_060--Hb_004543_030 Hb_006252_020 Hb_006252_020 Hb_004128_050--Hb_006252_020 Hb_003785_040 Hb_003785_040 Hb_004128_050--Hb_003785_040 Hb_002042_140 Hb_002042_140 Hb_004128_050--Hb_002042_140 Hb_005489_080 Hb_005489_080 Hb_004128_050--Hb_005489_080 Hb_000768_070 Hb_000768_070 Hb_004128_050--Hb_000768_070 Hb_000190_120 Hb_000190_120 Hb_004128_050--Hb_000190_120 Hb_000139_090 Hb_000139_090 Hb_001247_070--Hb_000139_090 Hb_001268_350 Hb_001268_350 Hb_001247_070--Hb_001268_350 Hb_124315_020 Hb_124315_020 Hb_001247_070--Hb_124315_020 Hb_001930_010 Hb_001930_010 Hb_001247_070--Hb_001930_010 Hb_000174_220 Hb_000174_220 Hb_001247_070--Hb_000174_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.143 20.416 4.64567 7.70387 20.2111 19.6081
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.81695 9.57525 12.7313 8.2996 9.59203

CAGE analysis