Hb_184074_010

Information

Type -
Description -
Location Contig184074: 17-652
Sequence    

Annotation

kegg
ID sot:102601269
description uncharacterized LOC102601269
nr
ID XP_012078379.1
description PREDICTED: uncharacterized protein LOC105639054 [Jatropha curcas]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A0A022RNQ3
description Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv11b017233mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_184074_010 0.0 - - PREDICTED: uncharacterized protein LOC105639054 [Jatropha curcas]
2 Hb_000334_030 0.0701812359 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000620_050 0.0805665332 - - PREDICTED: uncharacterized protein LOC105649924 [Jatropha curcas]
4 Hb_000959_110 0.0811055808 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 13 [Vitis vinifera]
5 Hb_004930_020 0.0874971914 transcription factor TF Family: MYB PREDICTED: transcriptional activator Myb-like [Jatropha curcas]
6 Hb_003371_280 0.0916258177 - - unnamed protein product [Vitis vinifera]
7 Hb_006755_030 0.0921999811 - - BURP domain-containing protein, putative [Theobroma cacao]
8 Hb_001268_290 0.0930244076 - - PREDICTED: glutaredoxin-C1-like [Jatropha curcas]
9 Hb_001019_030 0.0949372593 - - PREDICTED: 4-coumarate--CoA ligase 1-like [Jatropha curcas]
10 Hb_000377_130 0.1096559764 - - hypothetical protein POPTR_0016s00790g [Populus trichocarpa]
11 Hb_011519_040 0.1138760854 - - hypothetical protein POPTR_0015s04770g [Populus trichocarpa]
12 Hb_001500_090 0.1206746481 - - conserved hypothetical protein [Ricinus communis]
13 Hb_006386_010 0.1222125105 - - PREDICTED: polygalacturonase QRT3 [Jatropha curcas]
14 Hb_182869_010 0.12252696 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
15 Hb_186765_010 0.1259896617 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]
16 Hb_001976_100 0.1276005991 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X2 [Jatropha curcas]
17 Hb_002925_060 0.1318451058 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01547 [Jatropha curcas]
18 Hb_031579_010 0.1349651372 - - JHL22C18.10 [Jatropha curcas]
19 Hb_002750_030 0.1355726487 - - PREDICTED: protein IRX15-LIKE-like [Populus euphratica]
20 Hb_000633_030 0.1366697475 - - hypothetical protein POPTR_0003s21020g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_184074_010 Hb_184074_010 Hb_000334_030 Hb_000334_030 Hb_184074_010--Hb_000334_030 Hb_000620_050 Hb_000620_050 Hb_184074_010--Hb_000620_050 Hb_000959_110 Hb_000959_110 Hb_184074_010--Hb_000959_110 Hb_004930_020 Hb_004930_020 Hb_184074_010--Hb_004930_020 Hb_003371_280 Hb_003371_280 Hb_184074_010--Hb_003371_280 Hb_006755_030 Hb_006755_030 Hb_184074_010--Hb_006755_030 Hb_000334_030--Hb_004930_020 Hb_000334_030--Hb_000959_110 Hb_001500_090 Hb_001500_090 Hb_000334_030--Hb_001500_090 Hb_002750_030 Hb_002750_030 Hb_000334_030--Hb_002750_030 Hb_000193_320 Hb_000193_320 Hb_000334_030--Hb_000193_320 Hb_002925_060 Hb_002925_060 Hb_000620_050--Hb_002925_060 Hb_000620_050--Hb_003371_280 Hb_182869_010 Hb_182869_010 Hb_000620_050--Hb_182869_010 Hb_003058_240 Hb_003058_240 Hb_000620_050--Hb_003058_240 Hb_011519_040 Hb_011519_040 Hb_000620_050--Hb_011519_040 Hb_000959_110--Hb_006755_030 Hb_000959_110--Hb_004930_020 Hb_000377_130 Hb_000377_130 Hb_000959_110--Hb_000377_130 Hb_186765_010 Hb_186765_010 Hb_000959_110--Hb_186765_010 Hb_001976_100 Hb_001976_100 Hb_004930_020--Hb_001976_100 Hb_000009_250 Hb_000009_250 Hb_004930_020--Hb_000009_250 Hb_001019_030 Hb_001019_030 Hb_004930_020--Hb_001019_030 Hb_002370_020 Hb_002370_020 Hb_003371_280--Hb_002370_020 Hb_002374_510 Hb_002374_510 Hb_003371_280--Hb_002374_510 Hb_000866_400 Hb_000866_400 Hb_003371_280--Hb_000866_400 Hb_003371_280--Hb_011519_040 Hb_006755_030--Hb_000377_130 Hb_006755_030--Hb_011519_040 Hb_006755_030--Hb_186765_010 Hb_006755_030--Hb_000334_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.179181 0.221874 5.0462 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.59069 3.01561

CAGE analysis