Hb_184109_010

Information

Type -
Description -
Location Contig184109: 296-475
Sequence    

Annotation

kegg
ID ath:AT5G14750
description MYB66; transcription factor WER
nr
ID XP_012081531.1
description PREDICTED: transcription factor WER-like [Jatropha curcas]
swissprot
ID Q9SEI0
description Transcription factor WER OS=Arabidopsis thaliana GN=WER PE=1 SV=1
trembl
ID A0A067LKV6
description MYB family protein OS=Jatropha curcas GN=JCGZ_09589 PE=4 SV=1
Gene Ontology
ID GO:0005634
description partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_184109_010 0.0 - - PREDICTED: transcription factor WER-like [Jatropha curcas]
2 Hb_168241_010 0.0863575829 - - hypothetical protein POPTR_0013s14620g, partial [Populus trichocarpa]
3 Hb_000866_350 0.088152433 - - -
4 Hb_007017_050 0.0948313034 - - conserved hypothetical protein [Ricinus communis]
5 Hb_011063_040 0.1683872246 - - PREDICTED: uncharacterized protein LOC100853799 [Vitis vinifera]
6 Hb_001318_160 0.1739699393 - - Polygalacturonase precursor, putative [Ricinus communis]
7 Hb_004994_270 0.1995711504 - - PREDICTED: tRNA-specific adenosine deaminase 1 isoform X2 [Jatropha curcas]
8 Hb_014549_030 0.1995752648 - - receptor-kinase, putative [Ricinus communis]
9 Hb_000042_410 0.199579527 - - Patatin precursor, putative [Ricinus communis]
10 Hb_171420_010 0.1995900794 - - hypothetical protein AMTR_s00126p00056890 [Amborella trichopoda]
11 Hb_002081_110 0.1996406078 - - PREDICTED: uncharacterized protein LOC105129793 isoform X1 [Populus euphratica]
12 Hb_001031_130 0.1996430001 - - zinc finger protein, putative [Ricinus communis]
13 Hb_002986_150 0.1997541431 - - hypothetical protein glysoja_022060 [Glycine soja]
14 Hb_000185_190 0.1997863047 - - hypothetical protein L484_017526 [Morus notabilis]
15 Hb_015754_010 0.1998616929 - - Galactose oxidase precursor, putative [Ricinus communis]
16 Hb_001728_090 0.1998681613 transcription factor TF Family: MYB MYB family protein [Jatropha curcas]
17 Hb_001579_080 0.1999784629 - - serine/threonine protein kinase, putative [Ricinus communis]
18 Hb_000556_030 0.2002245689 - - PREDICTED: probable carboxylesterase 9 [Jatropha curcas]
19 Hb_000771_010 0.200261371 - - ubiquitin-protein ligase, putative [Ricinus communis]
20 Hb_003549_110 0.2004432498 - - PREDICTED: uncharacterized protein LOC105647409 [Jatropha curcas]

Gene co-expression network

sample Hb_184109_010 Hb_184109_010 Hb_168241_010 Hb_168241_010 Hb_184109_010--Hb_168241_010 Hb_000866_350 Hb_000866_350 Hb_184109_010--Hb_000866_350 Hb_007017_050 Hb_007017_050 Hb_184109_010--Hb_007017_050 Hb_011063_040 Hb_011063_040 Hb_184109_010--Hb_011063_040 Hb_001318_160 Hb_001318_160 Hb_184109_010--Hb_001318_160 Hb_004994_270 Hb_004994_270 Hb_184109_010--Hb_004994_270 Hb_168241_010--Hb_007017_050 Hb_071116_010 Hb_071116_010 Hb_168241_010--Hb_071116_010 Hb_000556_030 Hb_000556_030 Hb_168241_010--Hb_000556_030 Hb_168241_010--Hb_000866_350 Hb_000053_140 Hb_000053_140 Hb_168241_010--Hb_000053_140 Hb_000866_350--Hb_007017_050 Hb_000866_350--Hb_001318_160 Hb_000866_350--Hb_011063_040 Hb_000896_130 Hb_000896_130 Hb_000866_350--Hb_000896_130 Hb_004375_090 Hb_004375_090 Hb_007017_050--Hb_004375_090 Hb_001104_030 Hb_001104_030 Hb_007017_050--Hb_001104_030 Hb_141016_010 Hb_141016_010 Hb_007017_050--Hb_141016_010 Hb_009711_060 Hb_009711_060 Hb_007017_050--Hb_009711_060 Hb_011063_040--Hb_000556_030 Hb_104034_010 Hb_104034_010 Hb_011063_040--Hb_104034_010 Hb_011063_040--Hb_168241_010 Hb_011063_040--Hb_007017_050 Hb_002362_010 Hb_002362_010 Hb_001318_160--Hb_002362_010 Hb_144649_010 Hb_144649_010 Hb_001318_160--Hb_144649_010 Hb_001318_160--Hb_000896_130 Hb_000756_030 Hb_000756_030 Hb_001318_160--Hb_000756_030 Hb_014549_030 Hb_014549_030 Hb_004994_270--Hb_014549_030 Hb_000042_410 Hb_000042_410 Hb_004994_270--Hb_000042_410 Hb_171420_010 Hb_171420_010 Hb_004994_270--Hb_171420_010 Hb_002081_110 Hb_002081_110 Hb_004994_270--Hb_002081_110 Hb_001031_130 Hb_001031_130 Hb_004994_270--Hb_001031_130 Hb_000185_190 Hb_000185_190 Hb_004994_270--Hb_000185_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 15.1151 7.91091 1.93194 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis