Hb_184134_010

Information

Type -
Description -
Location Contig184134: 14743-19534
Sequence    

Annotation

kegg
ID gmx:100776396
description probable serine/threonine-protein kinase kinX-like
nr
ID XP_012075313.1
description PREDICTED: variable charge X-linked protein 3B [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KU05
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09483 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18035: 14570-18741 , PASA_asmbl_18036: 16313-16632 , PASA_asmbl_18037: 19095-19620
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_184134_010 0.0 - - PREDICTED: variable charge X-linked protein 3B [Jatropha curcas]
2 Hb_004668_110 0.1312947502 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003580_030 0.1326002996 - - fimbrin, putative [Ricinus communis]
4 Hb_044662_060 0.1461519123 - - PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic [Jatropha curcas]
5 Hb_000556_150 0.1575624951 - - PREDICTED: fasciclin-like arabinogalactan protein 10 [Populus euphratica]
6 Hb_006269_020 0.1580312077 - - autophagy protein, putative [Ricinus communis]
7 Hb_098315_070 0.1619289203 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105636030 isoform X1 [Jatropha curcas]
8 Hb_000608_110 0.1662306642 - - PREDICTED: probable tyrosine-protein phosphatase At1g05000 [Jatropha curcas]
9 Hb_000300_200 0.166591407 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
10 Hb_002750_050 0.172001089 - - Chromosome-associated kinesin KLP1, putative [Ricinus communis]
11 Hb_002217_380 0.1739283967 - - PREDICTED: uncharacterized protein LOC105643567 [Jatropha curcas]
12 Hb_000170_200 0.1772299892 - - PREDICTED: protein KRTCAP2 homolog [Jatropha curcas]
13 Hb_000566_070 0.1774361432 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000883_130 0.1775925675 - - PREDICTED: novel plant SNARE 11 [Jatropha curcas]
15 Hb_001501_080 0.1826889484 - - PREDICTED: uncharacterized protein LOC105640832 isoform X1 [Jatropha curcas]
16 Hb_007951_040 0.1839817288 - - signal peptidase family protein [Populus trichocarpa]
17 Hb_024505_020 0.1841150107 - - PREDICTED: probable receptor-like protein kinase At1g80640 [Jatropha curcas]
18 Hb_000392_370 0.1863854685 - - PREDICTED: protein IQ-DOMAIN 31-like [Jatropha curcas]
19 Hb_086022_010 0.1868678671 - - PREDICTED: succinate dehydrogenase assembly factor 1 homolog, mitochondrial [Nicotiana tomentosiformis]
20 Hb_000392_230 0.1873750679 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_184134_010 Hb_184134_010 Hb_004668_110 Hb_004668_110 Hb_184134_010--Hb_004668_110 Hb_003580_030 Hb_003580_030 Hb_184134_010--Hb_003580_030 Hb_044662_060 Hb_044662_060 Hb_184134_010--Hb_044662_060 Hb_000556_150 Hb_000556_150 Hb_184134_010--Hb_000556_150 Hb_006269_020 Hb_006269_020 Hb_184134_010--Hb_006269_020 Hb_098315_070 Hb_098315_070 Hb_184134_010--Hb_098315_070 Hb_004668_110--Hb_044662_060 Hb_002750_050 Hb_002750_050 Hb_004668_110--Hb_002750_050 Hb_000189_510 Hb_000189_510 Hb_004668_110--Hb_000189_510 Hb_001373_110 Hb_001373_110 Hb_004668_110--Hb_001373_110 Hb_002450_040 Hb_002450_040 Hb_004668_110--Hb_002450_040 Hb_000735_180 Hb_000735_180 Hb_003580_030--Hb_000735_180 Hb_003580_030--Hb_006269_020 Hb_003580_030--Hb_004668_110 Hb_007763_040 Hb_007763_040 Hb_003580_030--Hb_007763_040 Hb_006694_020 Hb_006694_020 Hb_003580_030--Hb_006694_020 Hb_002498_140 Hb_002498_140 Hb_044662_060--Hb_002498_140 Hb_005463_130 Hb_005463_130 Hb_044662_060--Hb_005463_130 Hb_000365_100 Hb_000365_100 Hb_044662_060--Hb_000365_100 Hb_001501_080 Hb_001501_080 Hb_044662_060--Hb_001501_080 Hb_000072_090 Hb_000072_090 Hb_044662_060--Hb_000072_090 Hb_001486_170 Hb_001486_170 Hb_044662_060--Hb_001486_170 Hb_000392_370 Hb_000392_370 Hb_000556_150--Hb_000392_370 Hb_000556_150--Hb_005463_130 Hb_086022_010 Hb_086022_010 Hb_000556_150--Hb_086022_010 Hb_007919_080 Hb_007919_080 Hb_000556_150--Hb_007919_080 Hb_000556_150--Hb_001501_080 Hb_007904_210 Hb_007904_210 Hb_000556_150--Hb_007904_210 Hb_002529_060 Hb_002529_060 Hb_006269_020--Hb_002529_060 Hb_006269_020--Hb_000735_180 Hb_001481_170 Hb_001481_170 Hb_006269_020--Hb_001481_170 Hb_004884_070 Hb_004884_070 Hb_006269_020--Hb_004884_070 Hb_001135_060 Hb_001135_060 Hb_006269_020--Hb_001135_060 Hb_033642_030 Hb_033642_030 Hb_006269_020--Hb_033642_030 Hb_000453_040 Hb_000453_040 Hb_098315_070--Hb_000453_040 Hb_002042_030 Hb_002042_030 Hb_098315_070--Hb_002042_030 Hb_002232_190 Hb_002232_190 Hb_098315_070--Hb_002232_190 Hb_003994_140 Hb_003994_140 Hb_098315_070--Hb_003994_140 Hb_000265_220 Hb_000265_220 Hb_098315_070--Hb_000265_220 Hb_002896_060 Hb_002896_060 Hb_098315_070--Hb_002896_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.68493 0.79768 7.9986 6.7319 8.39711 5.24029
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.03878 2.7626 2.68811 0.4687 2.11878

CAGE analysis