Hb_184403_020

Information

Type -
Description -
Location Contig184403: 3420-7625
Sequence    

Annotation

kegg
ID vvi:100259435
description pre-rRNA-processing protein ESF2
nr
ID XP_002284683.1
description PREDICTED: pre-rRNA-processing protein ESF2 [Vitis vinifera]
swissprot
ID Q6BSS5
description Pre-rRNA-processing protein ESF2 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=ESF2 PE=3 SV=2
trembl
ID D7SH86
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g00140 PE=4 SV=1
Gene Ontology
ID GO:0000166
description pre-rrna-processing protein esf2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18056: 3399-7624
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_184403_020 0.0 - - PREDICTED: pre-rRNA-processing protein ESF2 [Vitis vinifera]
2 Hb_071130_030 0.1164099378 - - PREDICTED: dnaJ homolog subfamily C member 17 [Jatropha curcas]
3 Hb_001117_090 0.1356497769 - - PREDICTED: NADPH-dependent pterin aldehyde reductase [Jatropha curcas]
4 Hb_003581_100 0.1369777948 - - PREDICTED: protein TWIN LOV 1 isoform X1 [Jatropha curcas]
5 Hb_000300_610 0.1374546351 - - cytosolic copper/zinc superoxide dismutase [Hevea brasiliensis]
6 Hb_001951_140 0.140949477 - - PREDICTED: uncharacterized protein LOC105649757 isoform X1 [Jatropha curcas]
7 Hb_002685_190 0.1415208209 transcription factor TF Family: SET PREDICTED: probable zinc metalloprotease EGY1, chloroplastic [Jatropha curcas]
8 Hb_004800_120 0.1415974681 - - PREDICTED: maf-like protein DDB_G0281937 isoform X1 [Jatropha curcas]
9 Hb_001278_110 0.1417921231 - - PREDICTED: uncharacterized protein LOC104613296 isoform X3 [Nelumbo nucifera]
10 Hb_143629_230 0.1432545673 - - ring finger, putative [Ricinus communis]
11 Hb_001019_040 0.1455758219 - - PREDICTED: monothiol glutaredoxin-S7, chloroplastic [Jatropha curcas]
12 Hb_012338_010 0.1469048416 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004871_040 0.1489675008 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase [Jatropha curcas]
14 Hb_001009_300 0.1491890544 transcription factor TF Family: GNAT PREDICTED: elongator complex protein 3-like [Gossypium raimondii]
15 Hb_009421_040 0.1497197353 - - PREDICTED: eukaryotic initiation factor 4A [Jatropha curcas]
16 Hb_000486_010 0.1502189435 - - PREDICTED: uncharacterized protein LOC105646661 isoform X1 [Jatropha curcas]
17 Hb_009658_020 0.1511819328 - - PREDICTED: transcription initiation factor TFIID subunit 15 [Jatropha curcas]
18 Hb_032258_030 0.151318748 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647563 [Jatropha curcas]
19 Hb_001246_060 0.1514564687 - - ATP binding protein, putative [Ricinus communis]
20 Hb_000375_310 0.1520906134 - - hypothetical protein JCGZ_18643 [Jatropha curcas]

Gene co-expression network

sample Hb_184403_020 Hb_184403_020 Hb_071130_030 Hb_071130_030 Hb_184403_020--Hb_071130_030 Hb_001117_090 Hb_001117_090 Hb_184403_020--Hb_001117_090 Hb_003581_100 Hb_003581_100 Hb_184403_020--Hb_003581_100 Hb_000300_610 Hb_000300_610 Hb_184403_020--Hb_000300_610 Hb_001951_140 Hb_001951_140 Hb_184403_020--Hb_001951_140 Hb_002685_190 Hb_002685_190 Hb_184403_020--Hb_002685_190 Hb_000676_290 Hb_000676_290 Hb_071130_030--Hb_000676_290 Hb_005398_030 Hb_005398_030 Hb_071130_030--Hb_005398_030 Hb_117134_010 Hb_117134_010 Hb_071130_030--Hb_117134_010 Hb_000963_190 Hb_000963_190 Hb_071130_030--Hb_000963_190 Hb_001235_070 Hb_001235_070 Hb_071130_030--Hb_001235_070 Hb_071130_030--Hb_002685_190 Hb_000926_300 Hb_000926_300 Hb_001117_090--Hb_000926_300 Hb_003599_040 Hb_003599_040 Hb_001117_090--Hb_003599_040 Hb_000877_020 Hb_000877_020 Hb_001117_090--Hb_000877_020 Hb_000340_140 Hb_000340_140 Hb_001117_090--Hb_000340_140 Hb_009421_040 Hb_009421_040 Hb_001117_090--Hb_009421_040 Hb_001246_060 Hb_001246_060 Hb_001117_090--Hb_001246_060 Hb_000680_140 Hb_000680_140 Hb_003581_100--Hb_000680_140 Hb_001421_060 Hb_001421_060 Hb_003581_100--Hb_001421_060 Hb_005736_060 Hb_005736_060 Hb_003581_100--Hb_005736_060 Hb_024714_010 Hb_024714_010 Hb_003581_100--Hb_024714_010 Hb_009711_020 Hb_009711_020 Hb_003581_100--Hb_009711_020 Hb_011781_030 Hb_011781_030 Hb_003581_100--Hb_011781_030 Hb_009954_040 Hb_009954_040 Hb_000300_610--Hb_009954_040 Hb_012338_010 Hb_012338_010 Hb_000300_610--Hb_012338_010 Hb_000486_010 Hb_000486_010 Hb_000300_610--Hb_000486_010 Hb_000061_320 Hb_000061_320 Hb_000300_610--Hb_000061_320 Hb_000300_610--Hb_002685_190 Hb_001278_110 Hb_001278_110 Hb_000300_610--Hb_001278_110 Hb_001951_140--Hb_001246_060 Hb_001951_140--Hb_002685_190 Hb_000154_080 Hb_000154_080 Hb_001951_140--Hb_000154_080 Hb_002686_020 Hb_002686_020 Hb_001951_140--Hb_002686_020 Hb_004645_050 Hb_004645_050 Hb_001951_140--Hb_004645_050 Hb_000714_030 Hb_000714_030 Hb_001951_140--Hb_000714_030 Hb_002685_190--Hb_003599_040 Hb_004204_120 Hb_004204_120 Hb_002685_190--Hb_004204_120 Hb_002963_010 Hb_002963_010 Hb_002685_190--Hb_002963_010 Hb_000465_060 Hb_000465_060 Hb_002685_190--Hb_000465_060 Hb_002685_190--Hb_009954_040 Hb_002685_190--Hb_001278_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.59556 2.95786 2.06151 1.99969 10.0399 13.5764
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.0124 19.02 5.64337 5.53965 10.886

CAGE analysis