Hb_184484_010

Information

Type -
Description -
Location Contig184484: 1843-6471
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_184484_010 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_002120_020 0.0085123819 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
3 Hb_027846_010 0.0090922801 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
4 Hb_038005_010 0.0284882572 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
5 Hb_181476_010 0.0797628648 - - -
6 Hb_004117_300 0.0910612082 - - -
7 Hb_000917_140 0.0997148732 - - -
8 Hb_007945_040 0.1083916137 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
9 Hb_004994_060 0.1390638155 - - PREDICTED: BON1-associated protein 2-like [Jatropha curcas]
10 Hb_003494_170 0.1416113277 - - -
11 Hb_000017_010 0.1419724856 - - -
12 Hb_002028_080 0.1423699516 - - hypothetical protein JCGZ_07571 [Jatropha curcas]
13 Hb_077421_010 0.1425846024 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
14 Hb_011269_050 0.1444615453 - - -
15 Hb_001827_020 0.1452356388 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
16 Hb_001768_030 0.1491513371 - - -
17 Hb_000922_230 0.1509083392 - - -
18 Hb_004724_110 0.1542410712 - - alpha-1,2-fucosyltransferase [Populus tremula x Populus alba]
19 Hb_000270_570 0.1552278662 - - PREDICTED: peroxidase 65-like [Jatropha curcas]
20 Hb_004642_010 0.1577505517 - - Integrase core domain, putative [Oryza sativa Japonica Group]

Gene co-expression network

sample Hb_184484_010 Hb_184484_010 Hb_002120_020 Hb_002120_020 Hb_184484_010--Hb_002120_020 Hb_027846_010 Hb_027846_010 Hb_184484_010--Hb_027846_010 Hb_038005_010 Hb_038005_010 Hb_184484_010--Hb_038005_010 Hb_181476_010 Hb_181476_010 Hb_184484_010--Hb_181476_010 Hb_004117_300 Hb_004117_300 Hb_184484_010--Hb_004117_300 Hb_000917_140 Hb_000917_140 Hb_184484_010--Hb_000917_140 Hb_002120_020--Hb_027846_010 Hb_002120_020--Hb_038005_010 Hb_002120_020--Hb_181476_010 Hb_002120_020--Hb_004117_300 Hb_002120_020--Hb_000917_140 Hb_027846_010--Hb_038005_010 Hb_027846_010--Hb_181476_010 Hb_007945_040 Hb_007945_040 Hb_027846_010--Hb_007945_040 Hb_027846_010--Hb_004117_300 Hb_038005_010--Hb_181476_010 Hb_038005_010--Hb_004117_300 Hb_038005_010--Hb_000917_140 Hb_181476_010--Hb_004117_300 Hb_181476_010--Hb_000917_140 Hb_004117_300--Hb_000917_140 Hb_000917_140--Hb_027846_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.00419291 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00632564 0

CAGE analysis