Hb_184541_010

Information

Type -
Description -
Location Contig184541: 565-888
Sequence    

Annotation

kegg
ID rcu:RCOM_0186960
description Selenoprotein T precursor, putative
nr
ID XP_012087837.1
description PREDICTED: selT-like protein [Jatropha curcas]
swissprot
ID Q9STZ2
description SelT-like protein OS=Arabidopsis thaliana GN=At3g47300 PE=2 SV=2
trembl
ID A0A067JWP5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24999 PE=4 SV=1
Gene Ontology
ID GO:0005623
description selt-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_184541_010 0.0 - - PREDICTED: selT-like protein [Jatropha curcas]
2 Hb_004125_070 0.1112326966 - - Glycolipid transfer protein, putative [Ricinus communis]
3 Hb_188313_010 0.1267309714 - - PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]
4 Hb_011918_010 0.1303487357 - - hypothetical protein glysoja_041948 [Glycine soja]
5 Hb_008185_020 0.1307422152 - - RING-H2 finger protein ATL3J, putative [Ricinus communis]
6 Hb_009083_030 0.1426043808 - - hypothetical protein POPTR_0007s14760g [Populus trichocarpa]
7 Hb_100137_010 0.1530471037 - - hypothetical protein JCGZ_17848 [Jatropha curcas]
8 Hb_001247_030 0.1587501062 - - -
9 Hb_007575_090 0.1661441402 - - putative. proteolipid subunit of vacuolar H+ ATPase, partial [Zea mays]
10 Hb_001486_050 0.1681600921 - - PREDICTED: arabinogalactan peptide 13-like [Jatropha curcas]
11 Hb_121694_010 0.1684160034 - - structural constituent of ribosome, putative [Ricinus communis]
12 Hb_007741_090 0.1701551252 - - Autophagy-related 8f -like protein [Gossypium arboreum]
13 Hb_053709_040 0.170690681 - - putative actin-97 protein [Linum usitatissimum]
14 Hb_066514_010 0.1730874488 - - hypothetical protein RCOM_0204720 [Ricinus communis]
15 Hb_006634_110 0.1733464582 - - BnaC04g40780D [Brassica napus]
16 Hb_048702_010 0.1749580398 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X1 [Jatropha curcas]
17 Hb_002900_100 0.1760015027 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]
18 Hb_002611_030 0.1848113787 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
19 Hb_122636_010 0.1897582264 - - dienelactone hydrolase family protein [Populus trichocarpa]
20 Hb_017014_010 0.1915445745 - - PREDICTED: syntaxin-132-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_184541_010 Hb_184541_010 Hb_004125_070 Hb_004125_070 Hb_184541_010--Hb_004125_070 Hb_188313_010 Hb_188313_010 Hb_184541_010--Hb_188313_010 Hb_011918_010 Hb_011918_010 Hb_184541_010--Hb_011918_010 Hb_008185_020 Hb_008185_020 Hb_184541_010--Hb_008185_020 Hb_009083_030 Hb_009083_030 Hb_184541_010--Hb_009083_030 Hb_100137_010 Hb_100137_010 Hb_184541_010--Hb_100137_010 Hb_001247_030 Hb_001247_030 Hb_004125_070--Hb_001247_030 Hb_004125_070--Hb_011918_010 Hb_004125_070--Hb_008185_020 Hb_004125_070--Hb_188313_010 Hb_004125_070--Hb_009083_030 Hb_182713_020 Hb_182713_020 Hb_188313_010--Hb_182713_020 Hb_188313_010--Hb_009083_030 Hb_188313_010--Hb_001247_030 Hb_001217_010 Hb_001217_010 Hb_188313_010--Hb_001217_010 Hb_188313_010--Hb_100137_010 Hb_007575_090 Hb_007575_090 Hb_011918_010--Hb_007575_090 Hb_066514_010 Hb_066514_010 Hb_011918_010--Hb_066514_010 Hb_002900_100 Hb_002900_100 Hb_011918_010--Hb_002900_100 Hb_002490_030 Hb_002490_030 Hb_011918_010--Hb_002490_030 Hb_053709_040 Hb_053709_040 Hb_008185_020--Hb_053709_040 Hb_008185_020--Hb_001247_030 Hb_008185_020--Hb_011918_010 Hb_030992_010 Hb_030992_010 Hb_008185_020--Hb_030992_010 Hb_009083_030--Hb_182713_020 Hb_009083_030--Hb_100137_010 Hb_017014_020 Hb_017014_020 Hb_009083_030--Hb_017014_020 Hb_002611_030 Hb_002611_030 Hb_009083_030--Hb_002611_030 Hb_004466_060 Hb_004466_060 Hb_100137_010--Hb_004466_060 Hb_048702_010 Hb_048702_010 Hb_100137_010--Hb_048702_010 Hb_100137_010--Hb_002611_030 Hb_000077_290 Hb_000077_290 Hb_100137_010--Hb_000077_290 Hb_122636_010 Hb_122636_010 Hb_100137_010--Hb_122636_010 Hb_100137_010--Hb_001217_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.05803 11.0247 28.177 222.583 10.1632 43.7792
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.94199 10.0194 14.7975 21.9419 14.9497

CAGE analysis