Hb_184570_010

Information

Type -
Description -
Location Contig184570: 3-948
Sequence    

Annotation

kegg
ID pop:POPTR_0001s21520g
description POPTRDRAFT_705676; COP9 family protein
nr
ID XP_012065643.1
description PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
swissprot
ID P43255
description COP9 signalosome complex subunit 8 OS=Arabidopsis thaliana GN=CSN8 PE=1 SV=1
trembl
ID A0A067L5B7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16904 PE=4 SV=1
Gene Ontology
ID GO:0000338
description cop9 signalosome complex subunit 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18066: 208-963
cDNA
(Sanger)
(ID:Location)		 012_M13.ab1: 208-963

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_184570_010 0.0 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
2 Hb_000416_070 0.0917444846 - - hypothetical protein JCGZ_21620 [Jatropha curcas]
3 Hb_003011_040 0.0996560902 - - PREDICTED: uncharacterized protein LOC102629536 isoform X2 [Citrus sinensis]
4 Hb_003363_120 0.1071766121 - - GTP-binding family protein [Populus trichocarpa]
5 Hb_003878_010 0.108483851 - - PREDICTED: uncharacterized protein LOC105632145 [Jatropha curcas]
6 Hb_000155_180 0.109752281 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]
7 Hb_004223_220 0.1105572026 - - PREDICTED: uncharacterized protein LOC105635366 isoform X1 [Jatropha curcas]
8 Hb_002271_020 0.1197540126 - - hypothetical protein EUGRSUZ_G02641 [Eucalyptus grandis]
9 Hb_002374_020 0.1206252446 - - PREDICTED: protein KRTCAP2 homolog [Jatropha curcas]
10 Hb_001377_180 0.1214847039 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1 [Jatropha curcas]
11 Hb_150360_010 0.1220582197 - - hypothetical protein JCGZ_16890 [Jatropha curcas]
12 Hb_010180_010 0.123924233 - - PREDICTED: uncharacterized protein LOC105631104 [Jatropha curcas]
13 Hb_005389_150 0.1243775527 - - conserved hypothetical protein [Ricinus communis]
14 Hb_096490_020 0.1266422726 - - PREDICTED: UPF0565 protein C2orf69 [Jatropha curcas]
15 Hb_140291_010 0.127102652 - - hypothetical protein JCGZ_17222 [Jatropha curcas]
16 Hb_029921_040 0.128147728 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001769_080 0.1292656376 - - hypothetical protein SORBIDRAFT_10g023200 [Sorghum bicolor]
18 Hb_003912_090 0.1293263109 - - peptidyl-tRNA hydrolase, putative [Ricinus communis]
19 Hb_002007_180 0.1294550836 - - PREDICTED: uncharacterized protein LOC105647525 [Jatropha curcas]
20 Hb_004934_070 0.1296373105 - - PREDICTED: U2 small nuclear ribonucleoprotein A' [Jatropha curcas]

Gene co-expression network

sample Hb_184570_010 Hb_184570_010 Hb_000416_070 Hb_000416_070 Hb_184570_010--Hb_000416_070 Hb_003011_040 Hb_003011_040 Hb_184570_010--Hb_003011_040 Hb_003363_120 Hb_003363_120 Hb_184570_010--Hb_003363_120 Hb_003878_010 Hb_003878_010 Hb_184570_010--Hb_003878_010 Hb_000155_180 Hb_000155_180 Hb_184570_010--Hb_000155_180 Hb_004223_220 Hb_004223_220 Hb_184570_010--Hb_004223_220 Hb_000069_160 Hb_000069_160 Hb_000416_070--Hb_000069_160 Hb_140291_010 Hb_140291_010 Hb_000416_070--Hb_140291_010 Hb_012760_130 Hb_012760_130 Hb_000416_070--Hb_012760_130 Hb_004934_070 Hb_004934_070 Hb_000416_070--Hb_004934_070 Hb_002687_080 Hb_002687_080 Hb_000416_070--Hb_002687_080 Hb_003011_040--Hb_004223_220 Hb_003011_040--Hb_000155_180 Hb_093666_020 Hb_093666_020 Hb_003011_040--Hb_093666_020 Hb_010180_010 Hb_010180_010 Hb_003011_040--Hb_010180_010 Hb_005389_150 Hb_005389_150 Hb_003011_040--Hb_005389_150 Hb_001269_320 Hb_001269_320 Hb_003011_040--Hb_001269_320 Hb_003688_130 Hb_003688_130 Hb_003363_120--Hb_003688_130 Hb_029921_040 Hb_029921_040 Hb_003363_120--Hb_029921_040 Hb_000111_380 Hb_000111_380 Hb_003363_120--Hb_000111_380 Hb_002601_110 Hb_002601_110 Hb_003363_120--Hb_002601_110 Hb_054865_120 Hb_054865_120 Hb_003363_120--Hb_054865_120 Hb_128048_010 Hb_128048_010 Hb_003878_010--Hb_128048_010 Hb_007875_030 Hb_007875_030 Hb_003878_010--Hb_007875_030 Hb_001814_070 Hb_001814_070 Hb_003878_010--Hb_001814_070 Hb_001454_400 Hb_001454_400 Hb_003878_010--Hb_001454_400 Hb_002105_090 Hb_002105_090 Hb_003878_010--Hb_002105_090 Hb_004800_230 Hb_004800_230 Hb_003878_010--Hb_004800_230 Hb_001377_180 Hb_001377_180 Hb_000155_180--Hb_001377_180 Hb_000771_100 Hb_000771_100 Hb_000155_180--Hb_000771_100 Hb_004502_020 Hb_004502_020 Hb_000155_180--Hb_004502_020 Hb_086703_010 Hb_086703_010 Hb_000155_180--Hb_086703_010 Hb_002272_260 Hb_002272_260 Hb_000155_180--Hb_002272_260 Hb_004223_220--Hb_093666_020 Hb_004223_220--Hb_004502_020 Hb_002296_040 Hb_002296_040 Hb_004223_220--Hb_002296_040 Hb_004223_220--Hb_000155_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.14386 6.38971 8.79139 15.9554 12.4383 29.0328
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.5185 19.6242 4.25657 9.2466 3.74905

CAGE analysis