Hb_184770_010

Information

Type -
Description -
Location Contig184770: 99-913
Sequence    

Annotation

kegg
ID sita:101765679
description auxin response factor 17-like
nr
ID -
description -
swissprot
ID Q0JCZ4
description Auxin response factor 9 OS=Oryza sativa subsp. japonica GN=ARF9 PE=2 SV=1
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_184770_010 0.0 - - -
2 Hb_013124_010 0.2085585673 - - PREDICTED: (+)-neomenthol dehydrogenase-like isoform X1 [Jatropha curcas]
3 Hb_001001_020 0.2405321737 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Populus euphratica]
4 Hb_005695_060 0.2438862164 - - PREDICTED: probable tRNA modification GTPase MnmE [Jatropha curcas]
5 Hb_022132_010 0.2486836681 - - unknown [Medicago truncatula]
6 Hb_019936_010 0.2489293195 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 10 [Jatropha curcas]
7 Hb_000815_100 0.2513890304 - - -
8 Hb_095471_010 0.2569640736 - - PREDICTED: putative sodium-coupled neutral amino acid transporter 7 [Jatropha curcas]
9 Hb_000042_210 0.257025147 - - PREDICTED: uncharacterized protein LOC105632808 [Jatropha curcas]
10 Hb_001160_120 0.2576200641 - - conserved hypothetical protein [Ricinus communis]
11 Hb_063409_020 0.2578594848 - - Calcium-binding protein, putative [Ricinus communis]
12 Hb_000976_080 0.2590941622 - - hypothetical protein VITISV_034376 [Vitis vinifera]
13 Hb_007765_060 0.260255344 - - Proliferating cell nuclear antigen [Theobroma cacao]
14 Hb_014720_170 0.2604761063 - - glutaredoxin-1, grx1, putative [Ricinus communis]
15 Hb_002831_040 0.261465615 - - PREDICTED: fatty acid amide hydrolase-like [Jatropha curcas]
16 Hb_002192_070 0.2617678984 - - -
17 Hb_085226_010 0.2649178041 - - hypothetical protein POPTR_0002s03930g [Populus trichocarpa]
18 Hb_007547_040 0.2653392647 - - Auxin response factor 9 [Aegilops tauschii]
19 Hb_000544_040 0.2661166417 - - PREDICTED: mitogen-activated protein kinase 9-like [Jatropha curcas]
20 Hb_000948_180 0.2667585902 - - PREDICTED: uncharacterized protein LOC105629501 [Jatropha curcas]

Gene co-expression network

sample Hb_184770_010 Hb_184770_010 Hb_013124_010 Hb_013124_010 Hb_184770_010--Hb_013124_010 Hb_001001_020 Hb_001001_020 Hb_184770_010--Hb_001001_020 Hb_005695_060 Hb_005695_060 Hb_184770_010--Hb_005695_060 Hb_022132_010 Hb_022132_010 Hb_184770_010--Hb_022132_010 Hb_019936_010 Hb_019936_010 Hb_184770_010--Hb_019936_010 Hb_000815_100 Hb_000815_100 Hb_184770_010--Hb_000815_100 Hb_002783_020 Hb_002783_020 Hb_013124_010--Hb_002783_020 Hb_005527_080 Hb_005527_080 Hb_013124_010--Hb_005527_080 Hb_005535_060 Hb_005535_060 Hb_013124_010--Hb_005535_060 Hb_002192_070 Hb_002192_070 Hb_013124_010--Hb_002192_070 Hb_012384_050 Hb_012384_050 Hb_013124_010--Hb_012384_050 Hb_001001_020--Hb_005695_060 Hb_000976_080 Hb_000976_080 Hb_001001_020--Hb_000976_080 Hb_001160_120 Hb_001160_120 Hb_001001_020--Hb_001160_120 Hb_002783_120 Hb_002783_120 Hb_001001_020--Hb_002783_120 Hb_000453_190 Hb_000453_190 Hb_001001_020--Hb_000453_190 Hb_018790_070 Hb_018790_070 Hb_001001_020--Hb_018790_070 Hb_005695_060--Hb_002783_120 Hb_005695_060--Hb_000976_080 Hb_005695_060--Hb_000453_190 Hb_152453_010 Hb_152453_010 Hb_005695_060--Hb_152453_010 Hb_005846_020 Hb_005846_020 Hb_005695_060--Hb_005846_020 Hb_004363_010 Hb_004363_010 Hb_022132_010--Hb_004363_010 Hb_000976_260 Hb_000976_260 Hb_022132_010--Hb_000976_260 Hb_002026_140 Hb_002026_140 Hb_022132_010--Hb_002026_140 Hb_002639_150 Hb_002639_150 Hb_022132_010--Hb_002639_150 Hb_002292_010 Hb_002292_010 Hb_022132_010--Hb_002292_010 Hb_000012_020 Hb_000012_020 Hb_022132_010--Hb_000012_020 Hb_011616_030 Hb_011616_030 Hb_019936_010--Hb_011616_030 Hb_000668_010 Hb_000668_010 Hb_019936_010--Hb_000668_010 Hb_032264_130 Hb_032264_130 Hb_019936_010--Hb_032264_130 Hb_000525_040 Hb_000525_040 Hb_019936_010--Hb_000525_040 Hb_010368_070 Hb_010368_070 Hb_019936_010--Hb_010368_070 Hb_001454_390 Hb_001454_390 Hb_019936_010--Hb_001454_390 Hb_000815_100--Hb_002192_070 Hb_000849_150 Hb_000849_150 Hb_000815_100--Hb_000849_150 Hb_007765_060 Hb_007765_060 Hb_000815_100--Hb_007765_060 Hb_030414_050 Hb_030414_050 Hb_000815_100--Hb_030414_050 Hb_095471_010 Hb_095471_010 Hb_000815_100--Hb_095471_010 Hb_000544_040 Hb_000544_040 Hb_000815_100--Hb_000544_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.83904 0.263264 2.49998 0.762702 3.24621 0.939776
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.339752 1.337 0.387904 0.246414 0.422071

CAGE analysis