Hb_184798_040

Information

Type -
Description -
Location Contig184798: 23556-29383
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa022673mg
description hypothetical protein
nr
ID XP_007220718.1
description hypothetical protein PRUPE_ppa022673mg [Prunus persica]
swissprot
ID P31843
description RNA-directed DNA polymerase homolog OS=Oenothera berteroana PE=4 SV=1
trembl
ID M5X787
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022673mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_184798_040 0.0 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
2 Hb_131949_010 0.1510387448 - - PREDICTED: uncharacterized protein LOC104227863, partial [Nicotiana sylvestris]
3 Hb_003362_060 0.1594932032 - - -
4 Hb_000171_040 0.2020739905 - - -
5 Hb_034569_020 0.2114299606 - - -
6 Hb_009742_010 0.2357729106 - - -
7 Hb_004899_280 0.239697365 - - -
8 Hb_010979_010 0.2437550966 - - -
9 Hb_005975_020 0.2556817171 - - -
10 Hb_084426_010 0.2895999542 - - -
11 Hb_006816_510 0.3010338364 - - Pectinesterase inhibitor, putative [Ricinus communis]
12 Hb_012500_010 0.3076478474 - - Ran GTPase binding protein, putative [Ricinus communis]
13 Hb_000922_310 0.3083462695 transcription factor TF Family: MYB PREDICTED: transcription factor MYB98-like [Jatropha curcas]
14 Hb_171659_010 0.3105290823 - - PREDICTED: uncharacterized protein LOC104903214 [Beta vulgaris subsp. vulgaris]
15 Hb_000146_060 0.3117435725 - - -
16 Hb_003206_040 0.3139898264 - - Auxin efflux carrier component, putative [Ricinus communis]
17 Hb_141990_060 0.3139917653 - - -
18 Hb_004409_010 0.3140079074 - - -
19 Hb_021470_010 0.3140729408 - - polyprotein [Citrus endogenous pararetrovirus]
20 Hb_030449_010 0.3142682946 - - -

Gene co-expression network

sample Hb_184798_040 Hb_184798_040 Hb_131949_010 Hb_131949_010 Hb_184798_040--Hb_131949_010 Hb_003362_060 Hb_003362_060 Hb_184798_040--Hb_003362_060 Hb_000171_040 Hb_000171_040 Hb_184798_040--Hb_000171_040 Hb_034569_020 Hb_034569_020 Hb_184798_040--Hb_034569_020 Hb_009742_010 Hb_009742_010 Hb_184798_040--Hb_009742_010 Hb_004899_280 Hb_004899_280 Hb_184798_040--Hb_004899_280 Hb_131949_010--Hb_003362_060 Hb_084426_010 Hb_084426_010 Hb_131949_010--Hb_084426_010 Hb_131949_010--Hb_000171_040 Hb_131949_010--Hb_034569_020 Hb_131949_010--Hb_004899_280 Hb_003362_060--Hb_084426_010 Hb_003362_060--Hb_000171_040 Hb_003362_060--Hb_034569_020 Hb_003362_060--Hb_004899_280 Hb_006816_510 Hb_006816_510 Hb_000171_040--Hb_006816_510 Hb_000171_040--Hb_084426_010 Hb_005975_020 Hb_005975_020 Hb_000171_040--Hb_005975_020 Hb_000922_310 Hb_000922_310 Hb_034569_020--Hb_000922_310 Hb_034569_020--Hb_009742_010 Hb_034569_020--Hb_004899_280 Hb_010979_010 Hb_010979_010 Hb_034569_020--Hb_010979_010 Hb_009742_010--Hb_000922_310 Hb_009742_010--Hb_004899_280 Hb_009742_010--Hb_131949_010 Hb_012500_010 Hb_012500_010 Hb_009742_010--Hb_012500_010 Hb_004899_280--Hb_000922_310 Hb_004899_280--Hb_005975_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0108546 0.00867088 0 0 0.00439538 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis