Hb_184798_080

Information

Type -
Description -
Location Contig184798: 92342-94934
Sequence    

Annotation

kegg
ID mdm:103434623
description E3 ubiquitin ligase BIG BROTHER-related-like
nr
ID XP_012072839.1
description PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
swissprot
ID Q9LT17
description E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana GN=BBR PE=2 SV=1
trembl
ID A0A067L0A6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05968 PE=4 SV=1
Gene Ontology
ID GO:0003824
description e3 ubiquitin ligase big brother-related

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18091: 42101-95058
cDNA
(Sanger)
(ID:Location)		 020_B09.ab1: 44045-95055

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_184798_080 0.0 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
2 Hb_009083_070 0.0610240326 - - PREDICTED: uncharacterized protein LOC105639870 [Jatropha curcas]
3 Hb_001147_110 0.0622469184 - - PREDICTED: dynamin-2A-like [Jatropha curcas]
4 Hb_002325_040 0.0626076288 - - PREDICTED: uncharacterized protein LOC105645422 isoform X1 [Jatropha curcas]
5 Hb_004129_070 0.065684827 - - PREDICTED: conserved oligomeric Golgi complex subunit 5 [Jatropha curcas]
6 Hb_002276_240 0.0661992962 - - PREDICTED: uncharacterized protein LOC105640682 [Jatropha curcas]
7 Hb_001135_120 0.066968622 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
8 Hb_003866_080 0.071732514 - - PREDICTED: uncharacterized protein LOC105639150 [Jatropha curcas]
9 Hb_006615_120 0.0720114712 - - PREDICTED: uncharacterized protein LOC105640682 [Jatropha curcas]
10 Hb_005723_020 0.0748039459 - - conserved hypothetical protein [Ricinus communis]
11 Hb_031641_010 0.0755792926 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000162_030 0.0758755367 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]
13 Hb_000174_060 0.0765616081 - - zinc finger family protein [Populus trichocarpa]
14 Hb_008568_020 0.0770641405 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]
15 Hb_000940_200 0.0772059574 - - PREDICTED: uncharacterized protein LOC105643779 [Jatropha curcas]
16 Hb_001767_140 0.0776771457 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
17 Hb_007062_030 0.0777372486 - - hypothetical protein VITISV_039033 [Vitis vinifera]
18 Hb_002046_110 0.0787764839 - - PREDICTED: TBC1 domain family member 15 isoform X2 [Jatropha curcas]
19 Hb_001205_200 0.0793663817 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000162_280 0.0793940187 - - PREDICTED: CTL-like protein DDB_G0288717 [Populus euphratica]

Gene co-expression network

sample Hb_184798_080 Hb_184798_080 Hb_009083_070 Hb_009083_070 Hb_184798_080--Hb_009083_070 Hb_001147_110 Hb_001147_110 Hb_184798_080--Hb_001147_110 Hb_002325_040 Hb_002325_040 Hb_184798_080--Hb_002325_040 Hb_004129_070 Hb_004129_070 Hb_184798_080--Hb_004129_070 Hb_002276_240 Hb_002276_240 Hb_184798_080--Hb_002276_240 Hb_001135_120 Hb_001135_120 Hb_184798_080--Hb_001135_120 Hb_009083_070--Hb_002276_240 Hb_009083_070--Hb_004129_070 Hb_009083_070--Hb_001135_120 Hb_002046_110 Hb_002046_110 Hb_009083_070--Hb_002046_110 Hb_005918_010 Hb_005918_010 Hb_009083_070--Hb_005918_010 Hb_000162_030 Hb_000162_030 Hb_001147_110--Hb_000162_030 Hb_008253_030 Hb_008253_030 Hb_001147_110--Hb_008253_030 Hb_001147_110--Hb_002276_240 Hb_001767_140 Hb_001767_140 Hb_001147_110--Hb_001767_140 Hb_001147_110--Hb_002325_040 Hb_002477_250 Hb_002477_250 Hb_002325_040--Hb_002477_250 Hb_002325_040--Hb_001135_120 Hb_005542_050 Hb_005542_050 Hb_002325_040--Hb_005542_050 Hb_140049_040 Hb_140049_040 Hb_002325_040--Hb_140049_040 Hb_000174_060 Hb_000174_060 Hb_004129_070--Hb_000174_060 Hb_004129_070--Hb_002276_240 Hb_008253_020 Hb_008253_020 Hb_004129_070--Hb_008253_020 Hb_006615_120 Hb_006615_120 Hb_004129_070--Hb_006615_120 Hb_001033_050 Hb_001033_050 Hb_004129_070--Hb_001033_050 Hb_004129_070--Hb_001135_120 Hb_002267_140 Hb_002267_140 Hb_002276_240--Hb_002267_140 Hb_002276_240--Hb_001767_140 Hb_002276_240--Hb_008253_030 Hb_003096_060 Hb_003096_060 Hb_001135_120--Hb_003096_060 Hb_001135_120--Hb_001033_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
49.6641 71.6383 56.1454 52.072 39.9472 56.5707
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.8231 28.5645 33.8572 48.0666 26.9533

CAGE analysis