Hb_185058_020

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig185058: 7216-23537
Sequence    

Annotation

kegg
ID tcc:TCM_026502
description NB-ARC domain-containing disease resistance protein, putative
nr
ID XP_012089461.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
swissprot
ID Q42484
description Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1
trembl
ID A0A061F3L8
description NB-ARC domain-containing disease resistance protein, putative OS=Theobroma cacao GN=TCM_026502 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_185058_020 0.0 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
2 Hb_009848_050 0.1691951827 - - PREDICTED: proline-rich receptor-like protein kinase PERK13 [Elaeis guineensis]
3 Hb_001085_210 0.1732477735 - - PREDICTED: myosin-binding protein 3 [Jatropha curcas]
4 Hb_007037_010 0.1774204171 - - PREDICTED: malate dehydrogenase [NADP], chloroplastic [Jatropha curcas]
5 Hb_041813_050 0.1830610122 - - hypothetical protein NitaMp096 [Nicotiana tabacum]
6 Hb_009848_060 0.1950263485 - - unknown [Glycine max]
7 Hb_069147_010 0.1996448189 desease resistance Gene Name: zf-BED PREDICTED: probable disease resistance protein At4g27220 isoform X1 [Populus euphratica]
8 Hb_010490_060 0.2050920539 - - PREDICTED: uncharacterized protein LOC105767021 [Gossypium raimondii]
9 Hb_001811_080 0.2051755835 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
10 Hb_003186_040 0.2097248974 - - PREDICTED: protein DENND6A [Jatropha curcas]
11 Hb_004520_010 0.2109666989 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
12 Hb_087161_010 0.2119029121 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_021854_020 0.2122529268 - - hypothetical protein POPTR_1763s00200g, partial [Populus trichocarpa]
14 Hb_012753_010 0.216415298 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
15 Hb_004052_060 0.2173945515 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
16 Hb_062013_010 0.2191650154 - - phosphoprotein phosphatase, putative [Ricinus communis]
17 Hb_000414_180 0.2223488682 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X2 [Vitis vinifera]
18 Hb_097021_010 0.2336691717 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
19 Hb_000963_090 0.2352935873 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Hevea brasiliensis]
20 Hb_014324_010 0.2379378833 - - hypothetical protein JCGZ_05575 [Jatropha curcas]

Gene co-expression network

sample Hb_185058_020 Hb_185058_020 Hb_009848_050 Hb_009848_050 Hb_185058_020--Hb_009848_050 Hb_001085_210 Hb_001085_210 Hb_185058_020--Hb_001085_210 Hb_007037_010 Hb_007037_010 Hb_185058_020--Hb_007037_010 Hb_041813_050 Hb_041813_050 Hb_185058_020--Hb_041813_050 Hb_009848_060 Hb_009848_060 Hb_185058_020--Hb_009848_060 Hb_069147_010 Hb_069147_010 Hb_185058_020--Hb_069147_010 Hb_009848_050--Hb_009848_060 Hb_010490_060 Hb_010490_060 Hb_009848_050--Hb_010490_060 Hb_014324_010 Hb_014324_010 Hb_009848_050--Hb_014324_010 Hb_000137_060 Hb_000137_060 Hb_009848_050--Hb_000137_060 Hb_001571_020 Hb_001571_020 Hb_009848_050--Hb_001571_020 Hb_013691_050 Hb_013691_050 Hb_001085_210--Hb_013691_050 Hb_003186_040 Hb_003186_040 Hb_001085_210--Hb_003186_040 Hb_001096_020 Hb_001096_020 Hb_001085_210--Hb_001096_020 Hb_001085_210--Hb_069147_010 Hb_142570_010 Hb_142570_010 Hb_001085_210--Hb_142570_010 Hb_158144_020 Hb_158144_020 Hb_007037_010--Hb_158144_020 Hb_001811_080 Hb_001811_080 Hb_007037_010--Hb_001811_080 Hb_002783_070 Hb_002783_070 Hb_007037_010--Hb_002783_070 Hb_021313_010 Hb_021313_010 Hb_007037_010--Hb_021313_010 Hb_000529_140 Hb_000529_140 Hb_007037_010--Hb_000529_140 Hb_062192_060 Hb_062192_060 Hb_041813_050--Hb_062192_060 Hb_005154_090 Hb_005154_090 Hb_041813_050--Hb_005154_090 Hb_003375_050 Hb_003375_050 Hb_041813_050--Hb_003375_050 Hb_041813_010 Hb_041813_010 Hb_041813_050--Hb_041813_010 Hb_012092_080 Hb_012092_080 Hb_041813_050--Hb_012092_080 Hb_000260_730 Hb_000260_730 Hb_009848_060--Hb_000260_730 Hb_002016_130 Hb_002016_130 Hb_009848_060--Hb_002016_130 Hb_030885_010 Hb_030885_010 Hb_009848_060--Hb_030885_010 Hb_004052_060 Hb_004052_060 Hb_009848_060--Hb_004052_060 Hb_000574_030 Hb_000574_030 Hb_009848_060--Hb_000574_030 Hb_069147_010--Hb_004052_060 Hb_069147_010--Hb_009848_060 Hb_000414_180 Hb_000414_180 Hb_069147_010--Hb_000414_180 Hb_069147_010--Hb_041813_050 Hb_044380_020 Hb_044380_020 Hb_069147_010--Hb_044380_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0887079 0.272559 0.755866 0.330838 0.216389 0.122014
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.014558 0.0114573 0.629574 2.2002 4.16702

CAGE analysis