Hb_185080_010

Information

Type -
Description -
Location Contig185080: 7127-10925
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18132: 6914-7386
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_185080_010 0.0 - - -
2 Hb_000434_050 0.09089984 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
3 Hb_078901_010 0.1212473755 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
4 Hb_011287_020 0.1294228823 - - ATP binding protein, putative [Ricinus communis]
5 Hb_003375_080 0.1327857934 - - PREDICTED: uncharacterized protein LOC105643382 isoform X1 [Jatropha curcas]
6 Hb_016404_010 0.1404587063 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
7 Hb_000805_150 0.1451172555 transcription factor TF Family: GRAS transcription factor, putative [Ricinus communis]
8 Hb_158123_010 0.14592721 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
9 Hb_009476_010 0.1468612836 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
10 Hb_000506_140 0.1471373912 - - hypothetical protein PRUPE_ppb019425mg [Prunus persica]
11 Hb_010589_130 0.1484867985 - - PREDICTED: uncharacterized protein LOC104884346 [Beta vulgaris subsp. vulgaris]
12 Hb_181824_010 0.1487390661 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
13 Hb_000181_080 0.1513618434 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
14 Hb_000363_110 0.1556021506 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 21 [Jatropha curcas]
15 Hb_004570_040 0.1576003333 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_033149_020 0.1593678523 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
17 Hb_000103_400 0.1595769152 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
18 Hb_005568_060 0.1599254146 - - PREDICTED: mitogen-activated protein kinase 3 [Jatropha curcas]
19 Hb_001846_040 0.16010779 - - cytochrome P450, putative [Ricinus communis]
20 Hb_000819_040 0.1624877633 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_185080_010 Hb_185080_010 Hb_000434_050 Hb_000434_050 Hb_185080_010--Hb_000434_050 Hb_078901_010 Hb_078901_010 Hb_185080_010--Hb_078901_010 Hb_011287_020 Hb_011287_020 Hb_185080_010--Hb_011287_020 Hb_003375_080 Hb_003375_080 Hb_185080_010--Hb_003375_080 Hb_016404_010 Hb_016404_010 Hb_185080_010--Hb_016404_010 Hb_000805_150 Hb_000805_150 Hb_185080_010--Hb_000805_150 Hb_000434_050--Hb_078901_010 Hb_000015_180 Hb_000015_180 Hb_000434_050--Hb_000015_180 Hb_000434_050--Hb_000805_150 Hb_010589_130 Hb_010589_130 Hb_000434_050--Hb_010589_130 Hb_000220_090 Hb_000220_090 Hb_000434_050--Hb_000220_090 Hb_078901_010--Hb_000805_150 Hb_009476_010 Hb_009476_010 Hb_078901_010--Hb_009476_010 Hb_000245_270 Hb_000245_270 Hb_078901_010--Hb_000245_270 Hb_000172_080 Hb_000172_080 Hb_078901_010--Hb_000172_080 Hb_000373_250 Hb_000373_250 Hb_078901_010--Hb_000373_250 Hb_001846_040 Hb_001846_040 Hb_011287_020--Hb_001846_040 Hb_011287_020--Hb_009476_010 Hb_006483_050 Hb_006483_050 Hb_011287_020--Hb_006483_050 Hb_001477_080 Hb_001477_080 Hb_011287_020--Hb_001477_080 Hb_011287_020--Hb_000805_150 Hb_019654_010 Hb_019654_010 Hb_011287_020--Hb_019654_010 Hb_001004_010 Hb_001004_010 Hb_003375_080--Hb_001004_010 Hb_003375_080--Hb_010589_130 Hb_003375_080--Hb_078901_010 Hb_000819_040 Hb_000819_040 Hb_003375_080--Hb_000819_040 Hb_003375_080--Hb_009476_010 Hb_136027_010 Hb_136027_010 Hb_016404_010--Hb_136027_010 Hb_000506_140 Hb_000506_140 Hb_016404_010--Hb_000506_140 Hb_005568_060 Hb_005568_060 Hb_016404_010--Hb_005568_060 Hb_000796_200 Hb_000796_200 Hb_016404_010--Hb_000796_200 Hb_002311_490 Hb_002311_490 Hb_016404_010--Hb_002311_490 Hb_000465_330 Hb_000465_330 Hb_016404_010--Hb_000465_330 Hb_000805_150--Hb_000245_270 Hb_116349_090 Hb_116349_090 Hb_000805_150--Hb_116349_090 Hb_000805_150--Hb_009476_010 Hb_007441_150 Hb_007441_150 Hb_000805_150--Hb_007441_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.423585 5.65687 1.08094 1.16306 0.013043 0.111997
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0763704 0.0961553 0.022973 0.233662 0.307455

CAGE analysis